Flavonoid pathway (Arabidopsis thaliana)

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Description

Pathway describing the flavonoid biosynthesis. It includes metabolites like quercetin, naringenin, and kaempferol.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Saito K, Yonekura-Sakakibara K, Nakabayashi R, Higashi Y, Yamazaki M, Tohge T, Fernie AR; ''The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity.''; Plant Physiol Biochem, 2013 PubMed Europe PMC Scholia
  2. Brazier-Hicks M, Evans KM, Gershater MC, Puschmann H, Steel PG, Edwards R; ''The C-glycosylation of flavonoids in cereals.''; J Biol Chem, 2009 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
141092view06:39, 3 November 2025EgonwLonger description
118336view13:14, 27 May 2021Mkutmonpublication ref
103424view11:59, 28 February 2019DeSlVertical allignment, moved reactions closer together for readability.
103423view11:46, 28 February 2019DeSlHorizontal layout
103422view11:34, 28 February 2019DeSlUpdated layout left hand side
103421view10:02, 28 February 2019DeSlChanged layout (righthand side and middle).
103027view08:25, 1 February 2019TokimatsuFix Annotations.
103026view07:31, 1 February 2019TokimatsuFix interactions, topology and labels.
102670view01:37, 17 January 2019TokimatsuFix interactions and labels.
102669view01:20, 17 January 2019TokimatsuFix interactions.
102644view08:49, 16 January 2019Tokimatsuremove reactions/metabolites undiscovered from Brassicaceae. Add reaction IDs.
102628view07:23, 15 January 2019Tokimatsuremove reactions/metabolites undiscovered from Brassicaceae
101938view04:31, 19 November 2018EgonwRemoved "undefined" as data source.
96270view07:16, 3 March 2018EgonwFixed the syntax of a KNApSAcK ID (too many zeros).
95486view10:25, 18 December 2017DeSlChanged all arrows to MIM-type conversion.
95484view10:01, 18 December 2017DeSlConnected unconnected line
95445view07:27, 15 December 2017Kozo2add rhea annotation
92987view18:09, 21 July 2017Khanspersconnected interaction
92901view09:46, 15 July 2017EgonwModified description
87496view01:43, 25 July 2016AlexanderPicoOntology Term : 'classic metabolic pathway' added !
87495view01:43, 25 July 2016AlexanderPicoOntology Term : 'flavonoid biosynthetic pathway' added !
87428view12:10, 22 July 2016Kozo2replace Kaempferol ID from KNApSAcK to PubChem-compound
87330view11:42, 21 July 2016Kozo2test direct xml editing
87319view00:24, 21 July 2016AlexanderPicoupdated ID for Cyanidin
87251view10:45, 20 July 2016Kozo2Quick edit to datanode annotation or property
86212view18:16, 6 July 2016Kozo2Quick edit to datanode annotation or property
86211view17:44, 6 July 2016Kozo2Quick edit to datanode annotation or property
86210view17:34, 6 July 2016Kozo2Quick edit to datanode annotation or property
86007view07:57, 24 June 2016Kozo2Quick edit to datanode annotation or property
84960view19:00, 3 April 2016Kozo2confirm the feasibility of updating ID mappings from local pathvisio bridge
84959view17:46, 3 April 2016Kozo2replace non-KNApSAcK IDs to KNApSAcK
84958view16:42, 3 April 2016Kozo2replace non-KNApSAcK IDs to KNApSAcK
84957view15:55, 3 April 2016Kozo2assign KNApSAcK IDs to Apigenin derivative
84956view15:27, 3 April 2016Kozo2assign KNApSAcK IDs to Liquiritigenin derivative
84955view13:44, 3 April 2016Kozo2assign KNApSAcK IDs to Genistein derivative
84954view13:04, 3 April 2016Kozo2assign KNApSAcK IDs to Eriodictyol derivative
84953view11:08, 3 April 2016Kozo2assign KNApSAcK IDs to Luteolin derivative
84950view05:24, 3 April 2016Kozo2assign KNApSAcK IDs to Cyanidine derivative
84947view17:11, 2 April 2016Kozo2assign KNApSAcK IDs to Isorhamnetin derivative
84944view04:30, 2 April 2016Kozo2assign KNApSAcK IDs to Quercetin derivative
84943view03:55, 2 April 2016Kozo2assign KNApSAcK IDs to Kaempferol derivative
84942view03:38, 2 April 2016Kozo2assign KNApSAcK IDs to Kaempferol derivative
84890view01:48, 31 March 2016Kozo2assign KNApSAcK IDs to the compounds under Isoliquiritigenin
84889view23:50, 30 March 2016Kozo2Quick edit to datanode annotation or property
84888view23:49, 30 March 2016Kozo2assign KNApSAcK IDs to catechins
84872view08:34, 29 March 2016Kozo2Test updating KNApSAcK ID from PathVisio
84831view14:12, 24 March 2016Kozo2Quick edit to datanode annotation or property
84830view13:28, 24 March 2016Kozo2Quick edit to datanode annotation or property
84829view12:49, 24 March 2016Kozo2Quick edit to datanode annotation or property
84827view10:16, 24 March 2016Kozo2Quick edit to datanode annotation or property

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(+)-epicatechinMetaboliteC00000956 (KNApSAcK)
3-O-MethylquercetinMetaboliteC00004632 (KNApSAcK)
4'-MethylluteolinMetaboliteC00001036 (KNApSAcK)
5,7-DimethoxyapigeninMetabolite161172 (PubChem-compound)
6-HydroxluteolinMetaboliteC00003884 (KNApSAcK)
6-MethoxyluteolinMetaboliteC00003885 (KNApSAcK)
A10MetaboliteC00007661 (KNApSAcK)
A11MetaboliteC00007570 (KNApSAcK)
A1MetaboliteC00006673 (KNApSAcK)
A2MetaboliteC00007655 (KNApSAcK)
A3MetaboliteC00006836 (KNApSAcK)
A4MetaboliteC00007656 (KNApSAcK)
A5MetaboliteC00007657 (KNApSAcK)
A6MetaboliteC00007658 (KNApSAcK)
A7MetaboliteC00007660 (KNApSAcK)
A8MetaboliteC00007659 (KNApSAcK)
A9MetaboliteC00006838 (KNApSAcK)
AcacetinMetaboliteC00003820 (KNApSAcK)
AfzelechinMetaboliteC00000937 (KNApSAcK)
Apigenin 7,4'-dimethyl etherMetaboliteC00001016 (KNApSAcK)
Apigenin 7-rutinosideMetaboliteC00004156 (KNApSAcK)
ApigeninMetaboliteC00003817 (KNApSAcK)
C 3-(2'-Xyl-6'-Cou)GlcMetaboliteC00006802 (KNApSAcK)
C 3-(6'-Cou)Glc-5-(6'-Mal)GlcMetaboliteC00006824 (KNApSAcK)
C 3-(6'-Cou)Glc-5-GlcMetaboliteC00006819 (KNApSAcK)
C 3-(6'-Cou)GlcMetaboliteC00006800 (KNApSAcK)
C 3-Glc-2'-XylMetaboliteC00006657 (KNApSAcK)
C 3-Glc-5-GlcMetaboliteC00002378 (KNApSAcK)
C 3-GlcMetaboliteC00002374 (KNApSAcK)
CHIGeneProductath:AT3G55120 (KEGG Genes)
CHIGeneProductath:AT5G05270 (KEGG Genes)
CHIGeneProductath:AT5G66220 (KEGG Genes)
CHSGeneProductath:AT5G13930 (KEGG Genes)
CatechinMetaboliteC00000947 (KNApSAcK)
Cinnamtannin A1MetaboliteC00009107 (KNApSAcK)
CosmosiinMetaboliteC00001017 (KNApSAcK)
Cyanidin 3-sophorosideMetaboliteC00006658 (KNApSAcK)
CyanidinMetaboliteC05905 (KEGG Compound)
DihydrokaempferolMetaboliteC00974 (KEGG Compound)
DihydroquercetinMetaboliteC00000677 (KNApSAcK)
Diosmetin 7-glucosideMetaboliteC00004357 (KNApSAcK)
Diosmetin 7-neohesperidosideMetaboliteC00004508 (KNApSAcK)
Diosmetin 7-rutinosideMetaboliteC00004362 (KNApSAcK)
EpiafzelechinMetaboliteC00008805 (KNApSAcK)
Epicatechin-(4beta->8)5-epicatechinMetaboliteC00002918 (KNApSAcK)
EriodictyolMetaboliteC00000960 (KNApSAcK)
GenkwaninMetaboliteC00001043 (KNApSAcK)
Hesperetin 7-glucosideMetaboliteC00008297 (KNApSAcK)
Hesperetin 7-neohesperidosideMetaboliteC00000987 (KNApSAcK)
HesperetinMetaboliteC00000968 (KNApSAcK)
HesperidinMetaboliteC00000970 (KNApSAcK)
HomoeriodictyolMetaboliteC00000969 (KNApSAcK)
I 3-(2''Rha)GlcMetaboliteC00005547 (KNApSAcK)
I 3-(2'-Rha)Glc-7-RhaMetabolite
I 3-(6'-Rha)GlcMetaboliteC00005548 (KNApSAcK)
I 3-Ara-7-RhaMetaboliteC00005551 (KNApSAcK)
I 3-AraMetaboliteC00005522 (KNApSAcK)
I 3-Glc-7-RhaMetaboliteC00005557 (KNApSAcK)
I 3-GlcMetaboliteC00005525 (KNApSAcK)
I 3-Rha-7-GlcMetaboliteC00005558 (KNApSAcK)
I 3-Rha-7-RhaMetaboliteC00005559 (KNApSAcK)
I 3-RhaMetaboliteC00005526 (KNApSAcK)
IsorhamnetinMetaboliteC00004635 (KNApSAcK)
K 3-(2'-Rha)Glc-7-RhaMetaboliteC00005237 (KNApSAcK)
K 3-(2'-Rha)GlcMetaboliteC00005167 (KNApSAcK)
K 3-(6'-(2''-Rha)Rha)GalMetaboliteC00005202 (KNApSAcK)
K 3-(6'-Cou)GlcMetaboliteC00005851 (KNApSAcK)
K 3-(6'-Glu)Glu-7-RhaMetaboliteC00005234 (KNApSAcK)
K 3-(6'-Glu)GluMetaboliteC00005166 (KNApSAcK)
K 3-(6'-Rha)GalMetaboliteC00005160 (KNApSAcK)
K 3-(6'-Rha)GlcMetaboliteC00005169 (KNApSAcK)
K 3-Ara-7-RhaMetaboliteC00005174 (KNApSAcK)
K 3-AraMetaboliteC00005132 (KNApSAcK)
K 3-Gal-7-RhaMetaboliteC00005178 (KNApSAcK)
K 3-GalMetaboliteC00005137 (KNApSAcK)
K 3-Glc-7-GlcMetaboliteC00005182 (KNApSAcK)
K 3-Glc-7-RhaMetaboliteC00005184 (KNApSAcK)
K 3-GlcMetaboliteC00005138 (KNApSAcK)
K 3-Rha-7-GlcMetaboliteC00005188 (KNApSAcK)
K 3-Rha-7-RhaMetaboliteC00005189 (KNApSAcK)
K 3-RhaMetaboliteC00005140 (KNApSAcK)
K 7-(2'-Rha)GlcMetaboliteC00005197 (KNApSAcK)
K 7-GlcMetaboliteC00005149 (KNApSAcK)
KaempferolMetaboliteC05903 (KEGG Compound)
LeucocyanidinMetaboliteC00007235 (KNApSAcK)
LeucopelargonidinMetaboliteC00020638 (KNApSAcK)
Luteolin 3',7-diglucosideMetaboliteC00004290 (KNApSAcK)
Luteolin 4',7-diglucosideMetaboliteC00004294 (KNApSAcK)
Luteolin 4'-glucosideMetaboliteC00004276 (KNApSAcK)
Luteolin 5,7-diglucosideMetabolite
Luteolin 7-glucosideMetaboliteC00004266 (KNApSAcK)
LuteolinMetaboliteC00000674 (KNApSAcK)
Naringenin 4'-O-glucosideMetaboliteC00008208 (KNApSAcK)
Naringenin chalconeMetaboliteC06561 (KEGG Compound)
NaringeninMetaboliteC00000982 (KNApSAcK)
NaringinMetaboliteC00000983 (KNApSAcK)
PelargonidinMetaboliteC00007232 (KNApSAcK)
Procyanidin B2MetaboliteC00009077 (KNApSAcK)
Procyanidin C1MetaboliteC00009098 (KNApSAcK)
PruninMetaboliteC00000998 (KNApSAcK)
Q 3-(2'-Rha)Glc-7-GlcMetaboliteC00005470 (KNApSAcK)
Q 3-(2'-Rha)GlcMetaboliteC00005412 (KNApSAcK)
Q 3-(6'-Rha)Glc-7-RhaMetaboliteC00005473 (KNApSAcK)
Q 3-(6'-Rha)GlcMetaboliteC00005413 (KNApSAcK)
Q 3-Ara-7-RhaMetaboliteC00005420 (KNApSAcK)
Q 3-AraMetaboliteC00005368 (KNApSAcK)
Q 3-Glc-7-GlcMetaboliteC00005427 (KNApSAcK)
Q 3-Glc-7-RhaMetaboliteC00005428 (KNApSAcK)
Q 3-GlcMetaboliteC00005373 (KNApSAcK)
Q 3-Rha-7-GlcMetaboliteC00005431 (KNApSAcK)
Q 3-Rha-7-RhaMetaboliteC00005432 (KNApSAcK)
Q 3-RhaMetaboliteC00005374 (KNApSAcK)
Q 7-GlcMetaboliteC00005382 (KNApSAcK)
QuercetinMetaboliteC00004631 (KNApSAcK)
Scutellarein 7-glucuronideMetaboliteC00004221 (KNApSAcK)
ScutellareinMetaboliteC00003834 (KNApSAcK)
[Epicatechin-(4beta->8)]4-epicatechinMetaboliteC00009109 (KNApSAcK)
epicatechin heptamerMetabolite
p-Coumaroyl-CoAMetaboliteC00223 (KEGG Compound)

Annotated Interactions

View all...
SourceTargetTypeDatabase referenceComment
ApigeninAcacetinmim-conversionR03571 (KEGG Reaction)
ApigeninCosmosiinmim-conversionR03574 (KEGG Reaction)
ApigeninLuteolinmim-conversionR06537 (KEGG Reaction)
C 3-(6'-Cou)Glc-5-GlcC 3-(6'-Cou)Glc-5-(6'-Mal)Glcmim-conversionR07910 (KEGG Reaction)
C 3-(6'-Cou)GlcC 3-(6'-Cou)Glc-5-Glcmim-conversionR06547 (KEGG Reaction)
C 3-Glc-2'-XylA1mim-conversionR10294 (KEGG Reaction)
C 3-GlcC 3-(6'-Cou)Glcmim-conversionR06544 (KEGG Reaction)
C 3-GlcC 3-Glc-2'-Xylmim-conversionR10291 (KEGG Reaction)
C 3-GlcC 3-Glc-5-Glcmim-conversionR06545 (KEGG Reaction)
C 3-GlcCyanidin 3-sophorosidemim-conversionR07878 (KEGG Reaction)
Cyanidin(+)-epicatechinmim-conversionR06542 (KEGG Reaction)
CyanidinC 3-Glcmim-conversionR06535 (KEGG Reaction)
DihydrokaempferolKaempferolmim-conversionR03126 (KEGG Reaction)
DihydrokaempferolLeucopelargonidinmim-conversionR03123 (KEGG Reaction)
Dihydrokaempferolmim-conversionR03124 (KEGG Reaction)
DihydroquercetinLeucocyanidinmim-conversionR03636 (KEGG Reaction)
DihydroquercetinQuercetinmim-conversionR02160 (KEGG Reaction)
EriodictyolDihydroquercetinmim-conversionR03640 (KEGG Reaction)
EriodictyolLuteolinmim-conversionR03590 (KEGG Reaction)
Hesperetin 7-glucosideHesperetin 7-neohesperidosidemim-conversionR08022 (KEGG Reaction)
HesperetinHesperetin 7-glucosidemim-conversionR08021 (KEGG Reaction)
KaempferolK 3-Galmim-conversionR06808 (KEGG Reaction)
KaempferolK 3-Rhamim-conversionR09802 (KEGG Reaction)
KaempferolQuercetinmim-conversionR06538 (KEGG Reaction)
Kaempferolmim-conversionR06611 (KEGG Reaction)
LeucocyanidinCatechinmim-conversionR06532 (KEGG Reaction)
LeucocyanidinCyanidinmim-conversionR05036 (KEGG Reaction)
LeucopelargonidinAfzelechinmim-conversionR06615 (KEGG Reaction)
LeucopelargonidinPelargonidinmim-conversionR04276 (KEGG Reaction)
LuteolinLuteolin 7-glucosidemim-conversionR03588 (KEGG Reaction)
Naringenin chalconeNaringeninmim-conversionR02446 (KEGG Reaction)
NaringeninApigeninmim-conversionR02445 (KEGG Reaction)
NaringeninDihydrokaempferolmim-conversionR02444 (KEGG Reaction)
NaringeninEriodictyolmim-conversionR02442 (KEGG Reaction)
NaringeninNaringenin 4'-O-glucosidemim-conversionR08006 (KEGG Reaction)
NaringeninPruninmim-conversionR02897 (KEGG Reaction)
PelargonidinEpiafzelechinmim-conversionR06541 (KEGG Reaction)
PruninNaringinmim-conversionR06820 (KEGG Reaction)
Q 3-GlcQ 3-(6'-Rha)Glcmim-conversionR04900 (KEGG Reaction)
Q 3-RhaQ 3-Rha-7-Glcmim-conversionR09804 (KEGG Reaction)
Quercetin3-O-Methylquercetinmim-conversionR02157 (KEGG Reaction)
QuercetinQ 3-Glcmim-conversionR02158 (KEGG Reaction)
QuercetinQ 3-Rhamim-conversionR09803 (KEGG Reaction)
p-Coumaroyl-CoANaringenin chalconemim-conversionR01613 (KEGG Reaction)
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