Biotic stress response gene network (Oryza sativa)
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Description
Biotic stress response gene-network in rice, with annotation of kinases and hub genes.
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- Seo YS, Chern M, Bartley LE, Han M, Jung KH, Lee I, Walia H, Richter T, Xu X, Cao P, Bai W, Ramanan R, Amonpant F, Arul L, Canlas PE, Ruan R, Park CJ, Chen X, Hwang S, Jeon JS, Ronald PC; ''Towards establishment of a rice stress response interactome.''; PLoS Genet, 2011 PubMed Europe PMC Scholia
- Mittal D, Chakrabarti S, Sarkar A, Singh A, Grover A; ''Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses.''; Plant Physiol Biochem, 2009 PubMed Europe PMC Scholia
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- Nigam D, Kumar S, Mishra DC, Rai A, Smita S, Saha A; ''Synergistic regulatory networks mediated by microRNAs and transcription factors under drought, heat and salt stresses in Oryza Sativa spp.''; Gene, 2015 PubMed Europe PMC Scholia
- Guo X, Hou X, Fang J, Wei P, Xu B, Chen M, Feng Y, Chu C; ''The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.''; Plant J, 2013 PubMed Europe PMC Scholia
- Joo J, Lee YH, Kim YK, Nahm BH, Song SI; ''Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities.''; Mol Cells, 2013 PubMed Europe PMC Scholia
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- Todaka D, Shinozaki K, Yamaguchi-Shinozaki K; ''Recent advances in the dissection of drought-stress regulatory networks and strategies for development of drought-tolerant transgenic rice plants.''; Front Plant Sci, 2015 PubMed Europe PMC Scholia
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- Jeong JS, Kim YS, Baek KH, Jung H, Ha SH, Do Choi Y, Kim M, Reuzeau C, Kim JK; ''Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions.''; Plant Physiol, 2010 PubMed Europe PMC Scholia
- Cheng S, Huang Y, Zhu N, Zhao Y; ''The rice WUSCHEL-related homeobox genes are involved in reproductive organ development, hormone signaling and abiotic stress response.''; Gene, 2014 PubMed Europe PMC Scholia
- Yun KY, Park MR, Mohanty B, Herath V, Xu F, Mauleon R, Wijaya E, Bajic VB, Bruskiewich R, de Los Reyes BG; ''Transcriptional regulatory network triggered byoxidative signals configures the early response mechanisms of japonica rice to chilling stress.''; BMC Plant Biol, 2010 PubMed Europe PMC Scholia
- Lakshmanan M, Mohanty B, Lim SH, Ha SH, Lee DY; ''Metabolic and transcriptional regulatory mechanisms underlying the anoxic adaptation of rice coleoptile.''; AoB Plants, 2014 PubMed Europe PMC Scholia
- Amir Hossain M, Lee Y, Cho JI, Ahn CH, Lee SK, Jeon JS, Kang H, Lee CH, An G, Park PB; ''The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice.''; Plant Mol Biol, 2010 PubMed Europe PMC Scholia
- Nigam D, Kumar S, Mishra DC, Rai A, Smita S, Saha A; ''Synergistic regulatory networks mediated by microRNAs and transcription factors under drought, heat and salt stresses in Oryza Sativa spp.''; Gene, 2015 PubMed Europe PMC Scholia
History
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External references
DataNodes
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| Name | Type | Database reference | Comment |
|---|---|---|---|
| GIP-11 | Protein | Os02g0782200 (Gramene Rice)  | |
| GIP-18 | Protein | Os09g0115500 (Gramene Rice) | |
| GIP-1 | Protein | Os03g0786100 (Gramene Rice) | |
| GIP-20 | Protein | Os08g0562200 (Gramene Rice) | |
| GIP-23 | Protein | Os10g0537300 (Gramene Rice) | |
| GIP-6 | Protein | Os04g0471400 (Gramene Rice) | |
| GIP-9 | GeneProduct | Os03g0736000 (Gramene Rice) | |
| GIP13 | Protein | Os02g0306401 (Gramene Rice) | GIP13, Nicotinanamine aminotransferase Expresses in seed and is involved in XA21 mediated immunity and submergence tolerance in rice pathways |
| GRNL1 | Protein | Os1g0667900 (Gramene Rice) | |
| GRNL2 | Protein | Os05g0563900 (Gramene Rice) | Os05g0563900|mRNA|AK062897|UTR |
| HSP90 | Protein | Os09g0482100 (Gramene Rice) | Os09g0482100|mRNA|AB111810|CDS+3'UTR |
| Kinase | |||
| NH1 | Protein | Os01g0194300 (Gramene Rice) | Os01g0194300|mRNA|AK120715|CDS+3'UTR |
| NH2 | Protein | Os01g0767900 (Gramene Rice) | |
| NRRH1 | Protein | Os05g0368000 (Gramene Rice) | Os05g0368000|COMBINER_EST|Os05g0368000|8 |
| NRRH2 | Protein | Os01g0508500 (Gramene Rice) | Os01g0508500|mRNA|AK120501|CDS+3'UTR |
| NRRH3 | Protein | Os01g0508100 (Gramene Rice) | Os01g0508100|COMBINER_EST|CI557510|0 |
| NRRIP-1 | Protein | O (Gramene Rice) | |
| NRRIP-2 | Protein | Os07g0508300 (Gramene Rice) | Os07g0508300|mRNA|AK063908|CDS+3'UTR |
| NRRIP-3 | Protein | Os11g0139500 (Gramene Rice) | Os11g0139500|mRNA|AK103113|CDS+3'UTR |
| NRR | Protein | Os01g0130200 (Gramene Rice) | Os01g0130200|COMBINER|CI449644|6 |
| OSEREBP1 | Protein | Os02g0782700 (Gramene Rice) | Os02g0782700|mRNA|AF193803|CDS+3'UTR |
| OSMPK12 | Protein | Os06g0708000 (Gramene Rice) | Os06g0708000|mRNA|AF177392|CDS+3'UTR |
| OSRac1 | Protein | Os01g0229400 (Gramene Rice) |
|
| Os01g0250900 | Protein | Os01g0250900 (Gramene Rice) | Os01g0250900|mRNA|AK065179|CDS+3'UTR |
| Os02g0817000 | Protein | Os02g0817000 (Gramene Rice) | |
| OsMKK4 | Protein | Os02g0787300 (Gramene Rice) | Os02g0787300|mRNA|AK120525|CDS+3'UTR |
| OsMPK1 | Protein | Os06g0154500 (Gramene Rice) | Os06g0154500|mRNA|AB183398|CDS+3'UTR |
| OsMPK5 | Protein | Os03g0285800 (Gramene Rice) | Os03g0285800|mRNA|AF216315|CDS+3'UTR |
| OsMPK8 | Protein | Os01g0665200 (Gramene Rice) | Os01g0665200|mRNA|AJ512643|CDS+3'UTR |
| OsRBOHB | Protein | Os01g0360200 (Gramene Rice) | Os01g0360200|mRNA|AK060770|CDS+3'UTR |
| OsWRKY28 | Protein | Os06g0649000 (Gramene Rice) | Os06g0649000|mRNA|AK106282|CDS+3'UTR |
| OsWRKY62 | GeneProduct | Os09g0417800 (Gramene Rice) | WRKY Family transcription factor 62 involved in biotic stress response and in NAC10 mediated abiotic stress response |
| OsWRKY67 | Protein | Os05g0183100 (Gramene Rice) | Os05g0183100|mRNA|AK066252|CDS+3'UTR |
| OsWRKY71 | Protein | Os02g0181300 (Gramene Rice) | Os02g0181300|mRNA|AK058773|CDS+3'UTR |
| PBZ1IP-1 | Protein | Os03g0183800 (Gramene Rice) | Os03g0183800|mRNA|AK100621|CDS+3'UTR |
| PBZ1IP-2 | Protein | Os03g0655400 (Gramene Rice) | |mRNA|AB011368|CDS+3'UTR |
| PBZ1 | Protein | Os12g0555500 (Gramene Rice) | Os12g0555500|mRNA|AK071613|CDS+3'UTR |
| RACK1A | Protein | Os01g0686800 (Gramene Rice) | Guanine nucleotide-binding protein subunit beta-like protein A (RACK1A) Expresses in seed and is involved in XA21 mediated immunity and submergence tolerance in rice pathways |
| RAR1 | Protein | Os02g0535400 (Gramene Rice) | Os02g0535400|mRNA|AK111881|CDS+3'UTR |
| SGT1 | Protein | Os08g0447200 (Gramene Rice) | Os08g0447200|mRNA|AK067377|CDS+3'UTR |
| SnRK1A | GeneProduct | Os05g0530500 (Gramene Rice) | Os05g0530500|mRNA|AF062479|CDS+3'UTR |
| TF | GeneProduct | ||
| TGA2.1IP-1 | Protein | Os07g0585000 (Gramene Rice) | Os07g0585000|mRNA|AK071269|CDS+3'UTR |
| TGA2.1IP-2 | Protein | Os12g0573200 (Gramene Rice) | Os12g0573200|mRNA|AK111522|CDS+3'UTR |
| TGA2.2 | Protein | Os03g0318600 (Gramene Rice) | |
| TGA2.3 | Protein | Os01g0279900 (Gramene Rice) | Os01g0279900|mRNA|AB051296|CDS+3'UTR |
| XA21 | Protein | Os11g0569733 (Gramene Rice) | |
| XB11IP-1 | Protein | Os11g0568700 (Gramene Rice) | Os11g0568700|mRNA|AK099671|CDS+3'UTR |
| XB11IP-2 | Protein | Os08g0151700 (Gramene Rice) | Os08g0151700|mRNA|AK073149|CDS+3'UTR |
| XB11 | Protein | Os01g0128800 (Gramene Rice) | |
| XB12IP-5 | Protein | ||
| XB12 | Protein | Os10g0577700 (Gramene Rice) | Os10g0577700|mRNA|AK061718|CDS+3'UTR |
| XB15 | Protein | Os03g0821300 (Gramene Rice) | Os03g0821300|mRNA|AJ575237|5'UTR+CDS |
| XB2-IP-3 | Protein | Os09g0133800 (Gramene Rice) | Os09g0133800|mRNA|AK060425|CDS+3'UTR |
| XB21 | Protein | Os12g0548200 (Gramene Rice) | Os12g0548200|mRNA|AK072993|CDS+3'UTR |
| XB22IP-1 | Protein | Os11g0106900 (Gramene Rice) | Os11g0106900|COMBINER_EST|CI445507|0 |
| XB22 | Protein | Os07g0171100 (Gramene Rice) | Os07g0171100|mRNA|AF272978|CDS+3'UTR |
| XB24 | Protein | Os01g0771200 (Gramene Rice) | XB24, ATPase Expresses in seed and is involved in XA21 mediated immunity and subergemce tolerance in rice pathways |
| XB2IP-1 | Protein | Os06g0681400 (Gramene Rice) | Os06g0681400|mRNA|AK121590|CDS+3'UTR |
| XB2IP-2 | Protein | Os04g0648500 (Gramene Rice) | Os04g0648500|mRNA|AK064227|CDS+3'UTR |
| XB2IP-4 | Protein | Os02g0148300 (Gramene Rice) | Os02g0148300|mRNA|AK071342|CDS+3'UTR |
| XB2 | Protein | Os06g0283200 (Gramene Rice) | Os06g0283200|mRNA|AK073829|CDS+3'UTR |
| XB3 | Protein | Os05g0112000 (Gramene Rice) | Os05g0112000|mRNA|AF272860|CDS |
| rLG2 | Protein | Os01g0859500 (Gramene Rice) | Os01g0859500|mRNA|AK101338|CDS+3'UTR |
| rTGA2.1 | Protein | Os07g0687700 (Gramene Rice) |
Annotated Interactions
No annotated interactions
