Chloroplastic amino acid biosynthesis (Arabidopsis thaliana)

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Description

Quality Tags

Ontology Terms

Bibliography

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History

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Compare	Revision	Action	Time	User	Comment
	117239	view	09:48, 19 May 2021	Eweitz	Modified title
	105899	view	11:36, 16 August 2019	Mkutmon	HMDB identifier normalization
	97781	view	13:52, 7 June 2018	Teacup	Modified description
	82872	view	16:29, 10 November 2015	Jmelius	Correct outdated id
	79787	view	15:55, 16 April 2015	Mkutmon	fixed unconnected line
	78388	view	10:22, 7 January 2015	MaintBot	added missing graphIds
	76222	view	12:58, 18 June 2014	Anwesha	Adding missing reactome URL
	76221	view	12:55, 18 June 2014	Anwesha	Reverted to version '13:49, 19 May 2014' by Anwesha
	76220	view	12:53, 18 June 2014	ReactomeTeam	Adding missing reactome URL
	75329	view	13:49, 19 May 2014	Sbohler	Added cell border and label for Chloroplast.
	74131	view	05:24, 1 April 2014	Egonw	Removed HMDB data sources where no ID was given.
	73879	view	21:52, 26 February 2014	MaintBot	Ontology Term : 'amino acid biosynthetic pathway' added !
	73876	view	21:44, 26 February 2014	MaintBot	Tried fixing odd scaling issue
	73604	view	13:22, 4 February 2014	Anwesha	New pathway

External references

DataNodes

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Name	Type	Database reference	Comment
2,3-dihydroxy-3-methylvalerate	Metabolite	HMDB12140 (HMDB)
2,3-dihydroxy-isovalerate	Metabolite	HMDB12141 (HMDB)
2,6-diaminopimelate	Metabolite
2-Acetolactate	Metabolite	HMDB06855 (HMDB)
2-aceto-2-hydroxybutanoate	Metabolite
2-oxo-3-methylvalerate	Metabolite
2-oxo-isovalerate	Metabolite
2-oxobutanoate	Metabolite
2-oxoglutarate	Metabolite
5-methyltetrahydropteroyltri glutamate	Metabolite
Acetyl-CoA	Metabolite
CO2	Metabolite
CoA	Metabolite
Cystathionine	Metabolite	HMDB00099 (HMDB)
Cysteine and Methionine Biosynthesis	Pathway
Cysteine	Metabolite	HMDB00574 (HMDB)
Glycolysis	Pathway
H+	Metabolite
H2O	Metabolite
HS	Metabolite
Homocysteine	Metabolite	HMDB00742 (HMDB)
Isoleucine	Metabolite	HMDB00172 (HMDB)
Lysine Biosynthesis	Pathway
Methionine	Metabolite	HMDB00696 (HMDB)
NADP+	Metabolite	HMDB00217 (HMDB)
NADPH	Metabolite	HMDB00221 (HMDB)
NH3	Metabolite
O-acetyl-L-serine	Metabolite
Serine	Metabolite	HMDB00187 (HMDB)
Valine and Isoleucine Biosynthesis	Pathway
Valine	Metabolite	HMDB00883 (HMDB)
acetate	Metabolite
acetolactate synthase LSU	Protein	P17597 (Uniprot-TrEMBL)
acetolactate synthase SSU 1	Protein	Q9FFF4 (Uniprot-TrEMBL)
acetolactate synthase SSU 2	Protein	Q93YZ7 (Uniprot-TrEMBL)
aspartate	Metabolite
branched-chain-amino-acid transaminase 2	Protein	Q9M439 (Uniprot-TrEMBL)
branched-chain-amino-acid transaminase 3	Protein	Q9M401 (Uniprot-TrEMBL)
branched-chain-amino-acid transaminase 5	Protein	Q9FYA6 (Uniprot-TrEMBL)
cystathionine beta-lyase	Protein	P53780 (Uniprot-TrEMBL)
cystathionine gamma-lyase	Protein	F4K5T2 (Uniprot-TrEMBL)
cysteine synthase	Protein	P47999 (Uniprot-TrEMBL)
diaminopimelate decarboxylase 1	Protein	Q949X7 (Uniprot-TrEMBL)
diaminopimelate decarboxylase 2	Protein	Q94A94 (Uniprot-TrEMBL)
diaminopimelate epimerase	Protein	Q9LFG2 (Uniprot-TrEMBL)
dihydroxy-acid dehydratase	Protein	AT3G23940 (Ensembl)
glutamate	Metabolite
ketol-acid reductoisomerase	Protein	Q05758 (Uniprot-TrEMBL)
lysine	Metabolite	HMDB00182 (HMDB)
meso-2,6-diaminopimelate	Metabolite
methionine synthase 3	Protein	Q0WNZ5 (Uniprot-TrEMBL)
pyruvate	Metabolite
serine acetyltransferase 1	Protein	Q42588 (Uniprot-TrEMBL)
serine racemase	Protein	Q2PGG3 (Uniprot-TrEMBL)
tetrahydropteroyltri glutamate	Metabolite

Annotated Interactions

No annotated interactions