Chloroplastic amino acid biosynthesis (Arabidopsis thaliana)

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Description

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Ontology Terms

Bibliography

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History

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Compare	Revision	Action	Time	User	Comment
	117239	view	09:48, 19 May 2021	Eweitz	Modified title
	105899	view	11:36, 16 August 2019	Mkutmon	HMDB identifier normalization
	97781	view	13:52, 7 June 2018	Teacup	Modified description
	82872	view	16:29, 10 November 2015	Jmelius	Correct outdated id
	79787	view	15:55, 16 April 2015	Mkutmon	fixed unconnected line
	78388	view	10:22, 7 January 2015	MaintBot	added missing graphIds
	76222	view	12:58, 18 June 2014	Anwesha	Adding missing reactome URL
	76221	view	12:55, 18 June 2014	Anwesha	Reverted to version '13:49, 19 May 2014' by Anwesha
	76220	view	12:53, 18 June 2014	ReactomeTeam	Adding missing reactome URL
	75329	view	13:49, 19 May 2014	Sbohler	Added cell border and label for Chloroplast.
	74131	view	05:24, 1 April 2014	Egonw	Removed HMDB data sources where no ID was given.
	73879	view	21:52, 26 February 2014	MaintBot	Ontology Term : 'amino acid biosynthetic pathway' added !
	73876	view	21:44, 26 February 2014	MaintBot	Tried fixing odd scaling issue
	73604	view	13:22, 4 February 2014	Anwesha	New pathway

External references

DataNodes

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Name	Type	Database reference	Comment
2,3-dihydroxy-3-methylvalerate	Metabolite	HMDB12140 (HMDB)
2,3-dihydroxy-isovalerate	Metabolite	HMDB12141 (HMDB)
2,6-diaminopimelate	Metabolite
2-Acetolactate	Metabolite	HMDB06855 (HMDB)
2-aceto-2-hydroxybutanoate	Metabolite
2-oxo-3-methylvalerate	Metabolite
2-oxo-isovalerate	Metabolite
5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase	Protein	O50008 (Uniprot-TrEMBL)
CO2	Metabolite
Cystathionine	Metabolite	HMDB00099 (HMDB)
Cysteine and Methionine Biosynthesis	Pathway
Cysteine	Metabolite	HMDB00574 (HMDB)
DNA	Metabolite
DNA (cytosine-5-)-methyltransferase	Protein	2.1.1.37 (Enzyme Nomenclature)
DNA 5-methylcytosine	Metabolite
Glycolysis	Pathway
Homocysteine	Metabolite	HMDB00742 (HMDB)
Isoleucine	Metabolite	HMDB00172 (HMDB)
Lysine Biosynthesis	Pathway
Methionine	Metabolite	HMDB00696 (HMDB)
NAD+	Metabolite	HMDB00902 (HMDB)
NADH	Metabolite	HMDB01487 (HMDB)
O-acetyl-L-serine	Metabolite
O-phosphoserine sulfhydrylase	Protein	2.5.1.65 (Enzyme Nomenclature)
S-Adenosylhomocysteine	Metabolite	HMDB00939 (HMDB)
S-adenosylmethionine synthase	Protein	Q9SJL8 (Uniprot-TrEMBL)
S-sdenosylmethionine	Metabolite	HMDB01185 (HMDB)
Serine	Metabolite	HMDB00187 (HMDB)
Valine and Isoleucine Biosynthesis	Pathway
Valine	Metabolite	HMDB00883 (HMDB)
acetolactate synthase	Protein	2.2.1.6 (Enzyme Nomenclature)
adenosylhomocysteinase	Protein	Q9LK36 (Uniprot-TrEMBL)
alanine dehydrogenase	Protein	1.4.1.1 (Enzyme Nomenclature)
alanine	Metabolite	HMDB00161 (HMDB)
aspartate	Metabolite
aspartate 4-decarboxylase	Protein	4.1.1.12 (Enzyme Nomenclature)
branched-chain-amino-acid transaminase	Protein	2.6.1.42 (Enzyme Nomenclature)
cystathionine beta-lyase	Protein	4.4.1.8 (Enzyme Nomenclature)
cystathionine gamma-lyase	Protein	4.4.1.1 (Enzyme Nomenclature)
diaminopimelate decarboxylase	Protein	4.1.1.20 (Enzyme Nomenclature)
diaminopimelate epimerase	Protein	Q9LFG2 (Uniprot-TrEMBL)
dihydroxy-acid dehydratase	Protein	4.2.1.9 (Enzyme Nomenclature)
ketol-acid reductoisomerase	Protein	Q05758 (Uniprot-TrEMBL)
lysine	Metabolite	HMDB00182 (HMDB)
meso-2,6-diaminopimelate	Metabolite
pyruvate	Metabolite
serine acetyltransferase	Protein	2.3.1.30 (Enzyme Nomenclature)
serine ammonia-lyase	Protein	4.3.1.17 (Enzyme Nomenclature)

Annotated Interactions

No annotated interactions