Small cell lung cancer (Homo sapiens)

From WikiPathways

Revision as of 12:25, 13 March 2025 by Eweitz (Talk | contribs)
Jump to: navigation, search


Description

Small cell lung carcinoma (SCLC) is a highly malignant cancer of the lung.

Genes altered in small cell lung carcinoma:

  • TP53 is mutated in 70-90% of SCLCs.
  • RB1 is inactivated in most SCLCs.
  • PTEN is mutated in 2-10% of SCLCs.
  • MYC amplifications and amplification of MYC family members is found in 30% of SCLCs.
  • FHIT protein expression is lost due to Loss of heterozygocity (LOH) on chromosome arm 3p found in more than 80% of SCLCs.

This description was adapted from [Wikipedia](https://en.wikipedia.org/wiki/Small-cell_carcinoma).

Phosphorylation sites were added based on information from PhosphoSitePlus (R), www.phosphosite.org.

Please use the New WikiPathways

View approved pathways at the new wikipathways.org. This website will shutdown soon.

Quality Tags

Ontology Terms

 

Bibliography

  1. Hornbeck PV, Zhang B, Murray B, Kornhauser JM, Latham V, Skrzypek E; ''PhosphoSitePlus, 2014: mutations, PTMs and recalibrations.''; Nucleic Acids Res, 2015 PubMed Europe PMC Scholia
  2. ''KEGG small cell lung cancer''; https://www.kegg.jp/dbget-bin/www_bget?pathway+map05222,
  3. Deng WG, Nishizaki M, Fang B, Roth JA, Ji L; ''Induction of apoptosis by tumor suppressor FHIT via death receptor signaling pathway in human lung cancer cells.''; Biochem Biophys Res Commun, 2007 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
142502view22:46, 11 March 2026Khansperswork in progress
142500view04:45, 11 March 2026Khansperseconomize layout, convert interactions to graphical lines where appropriate
140173view07:10, 4 August 2025EgonwMade a pathway clickable
140172view07:03, 4 August 2025EgonwModified description
140165view04:17, 3 August 2025Ash iyerremoved the pathway node.
140160view14:40, 2 August 2025Ash iyerAdded protein complexes
140159view12:45, 2 August 2025Ash iyerCell cycle pathway identifier added.
140139view19:21, 31 July 2025Khanspersupdated ptm
138081view23:56, 13 March 2025EweitzModified description
138080view23:56, 13 March 2025EweitzModified description
138078view21:56, 13 March 2025EweitzRefine state position
138077view21:55, 13 March 2025EweitzRefine state positions
138065view12:30, 13 March 2025EweitzOntology Term : 'lung small cell carcinoma' added !
138063view12:27, 13 March 2025EweitzClear dimension cache
138062view12:26, 13 March 2025EweitzEconomize layout
138061view12:25, 13 March 2025EweitzEconomize layout
137451view13:03, 2 March 2025EweitzFix padding in nucleus, refine layering
137450view12:55, 2 March 2025EweitzFix truncated text
137449view12:48, 2 March 2025EweitzRefine state positions
137442view12:42, 2 March 2025EweitzEconomize layout
137441view12:39, 2 March 2025EweitzEconomize layout
137437view12:35, 2 March 2025EweitzEconomize layout
137411view01:58, 2 March 2025EweitzEconomize layout
137410view01:53, 2 March 2025EweitzEconomize layout, fix truncated text
137409view01:42, 2 March 2025EweitzEconomize layout
137408view01:37, 2 March 2025EweitzEconomize layout
137407view01:33, 2 March 2025EweitzEconomize layout
137406view01:30, 2 March 2025EweitzStack grouped nodes
137405view01:26, 2 March 2025EweitzTailor node height
137151view23:22, 27 February 2025KhanspersModified description
135693view00:31, 27 October 2024EweitzStandardize case
135692view00:29, 27 October 2024EweitzEconomize layout
127394view19:35, 29 September 2023Khanspersupdated phosphosites
127235view20:16, 25 August 2023Khanspersadded lit ref and updated description
124606view19:35, 15 November 2022EgonwReplaced an old Wikidata identifier
123497view04:56, 29 July 2022EgonwMade a pathway clickable
119261view07:45, 23 June 2021Finterlyadded KEGG biopax information
108148view10:35, 29 November 2019FehrhartOntology Term : 'lung cancer' added !
108147view10:35, 29 November 2019FehrhartOntology Term : 'cancer' added !
108146view10:35, 29 November 2019FehrhartOntology Term : 'cancer pathway' added !
106808view13:28, 17 September 2019MaintBotHMDB identifier normalization
105318view00:01, 30 July 2019Khanspersupdated labels
105188view22:30, 17 July 2019Khanspersminor update to DNA Damage Response
105187view22:09, 17 July 2019Khanspersupdated NFKB activation, interrupted effects
105186view22:02, 17 July 2019Khanspersfixed legend and added FHIT info
105185view21:55, 17 July 2019Khanspersupdated interrupted interactions, legend
105184view21:33, 17 July 2019KhanspersModified description
105183view21:27, 17 July 2019Khanspersadded phosphosites etc
105153view21:29, 12 July 2019Khanspersexpanded FHIT information
105033view03:24, 2 July 2019Khansperswork in progress

External references

DataNodes

View all...
NameTypeDatabase referenceComment
AKT1GeneProduct207 (Entrez Gene)
AKT2GeneProduct208 (Entrez Gene)
AKT3GeneProduct10000 (Entrez Gene)
APAF1GeneProductENSG00000120868 (Ensembl)
BAK1GeneProductENSG00000030110 (Ensembl)
BAXGeneProductENSG00000087088 (Ensembl)
BCL2GeneProductENSG00000171791 (Ensembl)
BCL2L1GeneProductENSG00000171552 (Ensembl)
BIDGeneProductENSG00000015475 (Ensembl)
BIRC2GeneProductENSG00000110330 (Ensembl)
BIRC3GeneProductENSG00000023445 (Ensembl)
BIRC7GeneProductENSG00000101197 (Ensembl)
BIRC8GeneProductENSG00000163098 (Ensembl)
CASP3GeneProductENSG00000164305 (Ensembl)
CASP8GeneProductENSG00000064012 (Ensembl)
CASP9GeneProductENSG00000132906 (Ensembl)
CCND1GeneProductENSG00000110092 (Ensembl)
CCNE1GeneProductENSG00000105173 (Ensembl) CCNE1; cyclin E
CCNE2GeneProductENSG00000175305 (Ensembl) CCNE2; cyclin E
CDK2GeneProductENSG00000123374 (Ensembl) CDK2; cyclin-dependent kinase 2 [EC:2.7.1.-]
CDK4GeneProductENSG00000135446 (Ensembl) CDK4; cyclin-dependent kinase 4 [EC:2.7.1.-]
CDK6GeneProductENSG00000105810 (Ensembl) CDK6; cyclin-dependent kinase 6 [EC:2.7.1.-]
CDKN1AGeneProductENSG00000124762 (Ensembl)
CDKN1BGeneProductENSG00000111276 (Ensembl) CDKN1A; cyclin-dependent kinase inhibitor 1A (p21 Cip1)
CDKN1CGeneProductENSG00000129757 (Ensembl) CDKN1A; cyclin-dependent kinase inhibitor 1A (p21 Cip1)
CDKN2BGeneProductENSG00000147883 (Ensembl)
CHUKGeneProductENSG00000213341 (Ensembl)
CKS1BGeneProductENSG00000173207 (Ensembl)
CKS2GeneProductENSG00000123975 (Ensembl)
COL4A1GeneProduct1282 (Entrez Gene)
COL4A2GeneProduct1284 (Entrez Gene)
COL4A3GeneProductENSG00000169031 (Ensembl)
COL4A4GeneProduct1286 (Entrez Gene)
COL4A5GeneProductENSG00000188153 (Ensembl)
COL4A6GeneProduct1288 (Entrez Gene)
CYCSGeneProductENSG00000172115 (Ensembl)
Cell cyclePathway
DDB2GeneProductENSG00000134574 (Ensembl)
E2F1GeneProductENSG00000101412 (Ensembl) E2F1; E2F transcription factor 1
E2F2GeneProductENSG00000007968 (Ensembl) E2F2; E2F transcription factor 2
E2F3GeneProductENSG00000112242 (Ensembl) E2F3; E2F transcription factor 3
FHITGeneProductENSG00000189283 (Ensembl)
FN1GeneProduct2335 (Entrez Gene)
GADD45AGeneProductENSG00000116717 (Ensembl)
GADD45BGeneProductENSG00000099860 (Ensembl)
GADD45GGeneProductENSG00000130222 (Ensembl)
IKBKBGeneProductENSG00000104365 (Ensembl)
IKBKGGeneProductENSG00000269335 (Ensembl)
ITGA2GeneProduct3673 (Entrez Gene)
ITGA2BGeneProduct3674 (Entrez Gene)
ITGA3GeneProduct3675 (Entrez Gene)
ITGA6GeneProduct3655 (Entrez Gene)
ITGAVGeneProduct3685 (Entrez Gene)
ITGB1GeneProduct3688 (Entrez Gene)
LAMA1GeneProduct284217 (Entrez Gene)
LAMA2GeneProduct3908 (Entrez Gene)
LAMA3GeneProduct3909 (Entrez Gene)
LAMA4GeneProduct3910 (Entrez Gene)
LAMA5GeneProduct3911 (Entrez Gene)
LAMB1GeneProduct3912 (Entrez Gene)
LAMB2GeneProduct3913 (Entrez Gene)
LAMB3GeneProduct3914 (Entrez Gene)
LAMB4GeneProductENSG00000091128 (Ensembl)
LAMC1GeneProduct3915 (Entrez Gene)
LAMC2GeneProduct3918 (Entrez Gene)
LAMC3GeneProduct10319 (Entrez Gene)
MAXGeneProductENSG00000125952 (Ensembl)
MYCGeneProductENSG00000136997 (Ensembl)
NFKB1GeneProduct4790 (Entrez Gene)
NFKBIAGeneProductENSG00000100906 (Ensembl)
NFKBIBGeneProductENSG00000104825 (Ensembl)
NOS2GeneProductENSG00000007171 (Ensembl)
ObatoclaxMetaboliteQ7074645 (Wikidata)
OblimersenMetaboliteQ7075165 (Wikidata)
PIK3CAGeneProduct5290 (Entrez Gene)
PIK3CBGeneProduct5291 (Entrez Gene)
PIK3CDGeneProduct5293 (Entrez Gene)
PIK3R1GeneProduct5295 (Entrez Gene)
PIK3R2GeneProduct5296 (Entrez Gene)
PIK3R3GeneProductENSG00000117461 (Ensembl)
PIP3MetaboliteHMDB0004249 (HMDB)
POLKGeneProductENSG00000122008 (Ensembl)
PTENGeneProduct5728 (Entrez Gene)
PTGS2GeneProductENSG00000073756 (Ensembl)
PTK2GeneProduct5747 (Entrez Gene) PTK2; PTK2 protein tyrosine kinase 2 [EC:2.7.1.112
RARBGeneProductENSG00000077092 (Ensembl)
RB1GeneProductENSG00000139687 (Ensembl)
RELAGeneProductENSG00000173039 (Ensembl)
RXRAGeneProductENSG00000186350 (Ensembl)
RXRBGeneProductENSG00000204231 (Ensembl)
RXRGGeneProductENSG00000143171 (Ensembl)
Retinoic acidMetaboliteCHEBI:6067 (ChEBI)
RimiducidMetaboliteQ27279658 (Wikidata)
SKP1GeneProductENSG00000113558 (Ensembl)
TP53GeneProductENSG00000141510 (Ensembl)
TRAF1GeneProductENSG00000056558 (Ensembl)
TRAF2GeneProductENSG00000127191 (Ensembl)
TRAF3GeneProductENSG00000131323 (Ensembl)
TRAF4GeneProductENSG00000076604 (Ensembl)
TRAF5GeneProductENSG00000082512 (Ensembl)
TRAF6GeneProductENSG00000175104 (Ensembl)
Ubiquitin-mediated proteolysisPathwayWP183 (WikiPathways)
VenetoclaxMetaboliteCHEBI:133021 (ChEBI)
ZBTB17GeneProductENSG00000116809 (Ensembl)
p53 signaling pathwayPathway

Annotated Interactions

No annotated interactions

Retrieved from "https://oldclassic.wikipathways.org/index.php/Pathway:WP4658"
Personal tools