Fatty acid beta-oxidation (Rattus norvegicus)

From WikiPathways

Revision as of 06:18, 11 December 2020 by Egonw (Talk | contribs)

(diff) ←Older revision | Current revision (diff) | Newer revision→ (diff)

Description

Complete fatty acid beta-oxidation pathway for saturated and unsaturated fatty acids, developed and curated internally by BiGCaT Bioinformatics.

This pathway was previously split into three parts plus a meta file for statistics. If you still have these you can replace all four with this single pathway.

Proteins on this pathway have targeted assays available via the CPTAC Assay Portal

Comments

HomologyMapper: This pathway was inferred from Homo sapiens pathway [WP143_107117.gpml] with a 100.0% conversion rate.

Please use the New WikiPathways

View approved pathways at the new wikipathways.org. This website will shutdown soon.

Quality Tags

Ontology Terms

Bibliography

No bibliography

History

View all...

Revision	Action	Time	User	Comment
116489	view	10:27, 7 May 2021	Eweitz	Modified title
113952	view	06:18, 11 December 2020	Egonw	A few more clickable pathways
107609	view	10:56, 24 October 2019	DeSl	Updated with WP143_r107117 homology mapper conversion.
97050	view	15:12, 26 April 2018	DeSl	Connected unconnected line.
96255	view	15:26, 2 March 2018	Fehrhart	fixed connections
77419	view	18:07, 7 September 2014	Egonw	Added a ChEBI identifier.
77417	view	09:06, 7 September 2014	Egonw	Converted Labels into metabolite DataNodes but without an identifier.
77416	view	09:05, 7 September 2014	Egonw	Converted Labels into metabolite DataNodes but without an identifier.
73843	view	00:29, 26 February 2014	MaintBot	updated schema
67231	view	10:24, 26 June 2013	Christine Chichester	Ontology Term : 'fatty acid beta degradation pathway' added !
41658	view	02:34, 2 March 2011	MaintBot	Removed redundant pathway information and comments
34056	view	19:04, 9 December 2009	MaintBot	Automatic update of empty xrefs
21742	view	11:32, 14 November 2008	MaintBot	[[Pathway:Rattus norvegicus:Fatty Acid Beta Oxidation 1 BiGCaT]] moved to [[Pathway:WP506]]: Moved to stable identifier
8026	view	13:46, 7 January 2008	MaintBot	[[Pathway:Rat:Fatty Acid Beta Oxidation 1 BiGCaT]] moved to [[Pathway:Rattus norvegicus:Fatty Acid Beta Oxidation 1 BiGCaT]]: Renaming species
7636	view	16:06, 18 December 2007	MaintBot	fixed category names
7345	view	12:42, 4 November 2007	MaintBot	Added categories to GPML
19433	view	22:20, 22 May 2007	C.Redfern	gpml file for [[Rat:Fatty_Acid_Beta_Oxidation_1_BiGCaT]]
19432	view	22:20, 22 May 2007	Evelo	gpml file for [[Rat:Fatty_Acid_Beta_Oxidation_1_BiGCaT]]
6536	view	22:20, 22 May 2007	Nsalomonis	gpml file for [[Rat:Fatty_Acid_Beta_Oxidation_1_BiGCaT]]

External references

DataNodes

View all...

Name	Type	Database reference	Comment
(S)-3-Hydroxybutanoyl-CoA	Metabolite	CHEBI:15453 (ChEBI)
(S)-3-Hydroxydecanoyl-CoA	Metabolite	CHEBI:28325 (ChEBI)
(S)-3-Hydroxydodexanonyl-CoA	Metabolite
(S)-3-Hydroxyhexadecanoyl-CoA	Metabolite	CHEBI:27402 (ChEBI)
(S)-3-Hydroxyoctanoyl-CoA	Metabolite	CHEBI:28632 (ChEBI)
(S)-3-Hydroxytetradecanoyl-CoA	Metabolite	CHEBI:27466 (ChEBI)
2-trans-4-cis-decadienoyl-CoA	Metabolite	CHEBI:29119 (ChEBI)
2-trans-dodecenoyl-CoA	Metabolite	CHEBI:15471 (ChEBI)
3-Oxo-octanoyl-CoA	Metabolite	CHEBI:28264 (ChEBI)
3-Oxocanoyl-CoA	Metabolite
3-Oxododexanoyl-CoA	Metabolite	11966169 (PubChem-compound)
3-Oxohexanoyl-CoA	Metabolite	CHEBI:27648 (ChEBI)
3-Oxopalmitoyl-CoA	Metabolite	CHEBI:15491 (ChEBI)
3-trans-decenoyl-CoA	Metabolite	CHEBI:29126 (ChEBI)
4-cis-dexeboyl-CoA	Metabolite
Acadl	GeneProduct	ENSRNOG00000012966 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:33
Acadm	GeneProduct	ENSRNOG00000009845 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:34
Acads	GeneProduct	ENSRNOG00000001177 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:35
Acadvl	GeneProduct	ENSRNOG00000018114 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:37
Acat1	GeneProduct	ENSRNOG00000007862 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:38
Acetoacetyl-CoA	Metabolite	1420-36-6 (CAS)
Acetyl-CoA	Metabolite	72-89-9 (CAS)
Acsl1	GeneProduct	ENSRNOG00000010633 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2180
Acsl3	GeneProduct	ENSRNOG00000014718 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2181
Acsl4	GeneProduct	ENSRNOG00000019180 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2182
Acsl5	GeneProduct	ENSRNOG00000016265 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:51703
Acsl6	GeneProduct	ENSRNOG00000026745 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:23305
Acss2	GeneProduct	ENSRNOG00000018755 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:55902
Acyl-CoA	Metabolite	9029-97-4 (CAS)
Butanoyl-CoA	Metabolite	CHEBI:15517 (ChEBI)
Chkb	GeneProduct	ENSRNOG00000011404 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1120
Cpt1a	GeneProduct	ENSRNOG00000014254 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1374
Cpt1b	GeneProduct	ENSRNOG00000010438 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1375
Cpt2	GeneProduct	ENSRNOG00000012443 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1376
Crat	GeneProduct	ENSRNOG00000018145 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1384
Decanoyl-CoA	Metabolite	CHEBI:28493 (ChEBI)
Decr1	GeneProduct	ENSRNOG00000008236 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1666
Dihydroxyacetone Phosphate	Metabolite	57-04-5 (CAS)
Dld	GeneProduct	ENSRNOG00000006364 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1738
Dxotetradecanoyl-CoA	Metabolite
Eci1	GeneProduct	ENSRNOG00000008843 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1632
Fatty Acid	Metabolite	CHEBI:35366 (ChEBI)
Gcdh	GeneProduct	ENSRNOG00000003307 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2639
Gk2	GeneProduct	ENSRNOG00000029397 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2712
Glutarate	Metabolite	743 (PubChem-compound)
Glutaryl-CoA	Metabolite	CHEBI:15524 (ChEBI)
Glyceraldehyde-3-Phosphate	Metabolite	591-57-1 (CAS)
Glycerol	Metabolite	56-81-5 (CAS)
Gpd2	GeneProduct	ENSRNOG00000033824 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2820
Gykl1	GeneProduct	ENSRNOG00000029096 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2710
Hadh	GeneProduct	ENSRNOG00000010697 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:3033
Hadha	GeneProduct	ENSRNOG00000024629 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:3030
Hadhb	GeneProduct	ENSRNOG00000010800 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:3032
Hexanoyl-CoA	Metabolite	CHEBI:27540 (ChEBI)
L-Glycerol-3-Phosphate	Metabolite	CHEBI:15978 (ChEBI)
LOC100911186	GeneProduct	ENSRNOG00000047565 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1892
LOC100911515	GeneProduct	ENSRNOG00000050669 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:7167
Lauroyl-CoA	Metabolite	6244-92-4 (CAS)
Linoleoyl-CoA	Metabolite	40757-80-0 (CAS)
Lipc	GeneProduct	ENSRNOG00000060338 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:3990
Lipe	GeneProduct	ENSRNOG00000020546 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:3991
Lipf	GeneProduct	ENSRNOG00000019448 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:8513
Lpl	GeneProduct	ENSRNOG00000012181 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:4023
Myristoyl-CoA	Metabolite	CHEBI:15532 (ChEBI)
Octaoyl-CoA	Metabolite
Palmitoyl-CoA	Metabolite	CHEBI:15525 (ChEBI)
Pnpla2	GeneProduct	ENSRNOG00000018736 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:57104
Slc25a20	GeneProduct	ENSRNOG00000020288 (Ensembl)	Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:788
TCA cycle	Pathway	WP78 (WikiPathways)
Trans-Dec-2-enoyl-CoA	Metabolite	CHEBI:10723 (ChEBI)
Trans-Hex-2-enoyl-CoA	Metabolite	CHEBI:28706 (ChEBI)
Trans-Hexadecanoyl-CoA	Metabolite
Trans-Oct-2-enoyl-CoA	Metabolite	CHEBI:27537 (ChEBI)
Trans-Tetradex-2-enoyl-CoA	Metabolite
Triacylglycerol	Metabolite	CHEBI:17855 (ChEBI)
cis,cis-3,6-Dodecadienoyl-CoA	Metabolite	CHEBI:28002 (ChEBI)
trans,cis-Lauro-2,6-dienoyl-CoA	Metabolite	CHEBI:28387 (ChEBI)

Annotated Interactions

No annotated interactions

Fatty acid beta-oxidation (Rattus norvegicus)

From WikiPathways

Description

Comments

Please use the New WikiPathways

Quality Tags

Ontology Terms

Bibliography

History

External references

DataNodes

Annotated Interactions

Views

Personal tools

search

Download

Activity

Tools

Community Portals

Toolbox