Plant primary metabolism (Arabidopsis thaliana)

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1Kaempferol 3-glucoside-(1->6)-glucoside-7-alpha-L-rhamnosideIsorhamnetin 3-neohesperidoside-7-rhamnosideQuercetin 3-O-alpha-L-arabinopyranosideKaempferol 3-rhamnoside-7-glucosideDiosmetin 7-neohesperidosideKaempferol6-MethoxyluteolinDiosmetin 7-rutinosidePruninCyanidin 3-O-[2''-O-(xylosyl) glucoside] 5-O-(6'''-O-malonyl) glucosideCyanidin 3-(6-p-coumaroylglucoside)CyanidinEriodictyolGenkwaninKaempferol 3-galactosideTilirosidePelargonidinLuteolin3-O-MethylquercetinHesperetin 7-glucosideCyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-O-(glucosyl)-p-coumaroyl) glucoside] 5-O-glucosideCyanidin 3-O-[2''-O-(xylosyl) 6''-O-(p-O-(glucosyl) p-coumaroyl) glucoside] 5-O-[6'''-O-(malonyl) glucoside]ApigeninCyanidin 3-(6''-p-coumaryl-2'''-sinapylsambubioside)-5-(6-malonylglucoside)Kaempferol 3-gentiobiosideDihydroquercetinCyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-malonylglucosideQuercetin 7-glucosideLuteolin 5,7-diglucosideScutellareinApigenin 7,4'-dimethyl etherIsorhamnetin 3-alpha-L-arabinopyranoside-7-rhamnosideAfzelinCyanidin 3-sambubioside-5-glucosideKaempferol 3-neohesperidosideLuteolin 3',7-diglucosideKaempferol 3-O-rutinosideCyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) glucoside] 5-O-glucosideApigenin 7-rutinosideLuteolin 4'-glucosideIsorhamnetin 3-arabinosideCyanidin 3-(6''-(E)-p-coumarylsambubioside)-5-glucosideIsorhamnetin 3-O-rutinosideNaringin[Epicatechin-(4beta->8)]4-epicatechinIsorhamnetin 3-rhamnosideKaempferol 3-robinoside (K 3-(6''-RhaGal))Quercetin 3,7-diglucosideQuercetin 3-neohesperidosideCyanidin 3,5-di-O-glucosideAstragalinCyanidin 3-O-[2-O-(2-O-(sinapoyl)-bata-D-xylopyranosyl) 6-O-(4-O-(beta-D-glucopyranosyl)-p-coumaroyl-bata-D-glucopyranoside] 5-O-[6-O-(malonyl) bata-D-glucopyranoside]Isorhamnetin 3-rhamnoside-7-glucosideProcyanidin B2Quercetin 3-O-L-rhamnosideQuercetin 3-rhamnoside-7-glucosideEpicatechin-(4beta->8)5-epicatechinRutinEpiafzelechin6-HydroxluteolinIsorhamnetin 3-O-beta-D-glucopyranosideDiosmetin 7-glucosideHomoeriodictyolLuteolin 4',7-diglucosideHesperetin 7-neohesperidosideCinnamtannin A1Quercetin 3-neohesperidoside-7-rhamnosideLeucopelargonidinNaringenin 4'-O-glucosideKaempferol 3-galactoside-7-rhamnosideKaempferol 3-glucoside-7-rhamnosideCyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) 6''-O-(p-coumaroyl) glucoside] 5-O-glucosideKaempferol 3-O-rhamninosideLuteolin 7-glucosideCyanidin 3-glucosideCyanidin 3-sophorosideKaempferol 3,7-diglucosideCyanidine 3-sambubiosideCyanidin 3-(6-p-coumaroylglucoside)-5-(6-malonylglucoside)HesperetinIsorhamnetin 3-O-beta-glucopyranoside-7-O-alpha-rhamnopyranoside(+)-epicatechinHesperidinQuercetin 3,7-dirhamnosideCyanidin 3-(6-p-coumaroylglucoside)-5-glucosideKaempferol 3,7-di-O-rhamnosideCosmosiinKaempferol 3-arabinosideAfzelechinHirsutrin, Quercetin 3-GlucosidecatechinChalcone synthaseQuercetin 3-rutinoside-7-rhamnosideCyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) 6''-O-(p-O-(glucosyl) p-coumaroyl) glucoside] 5-O-glucosideQuercetin 3-Arabinoside-7-rhamnoside5,7-DimethoxyapigeninQuercetinDihydrokaempferolLeucocyanidinScutellarein 7-glucuronidep-Coumaroyl-CoAIsorhamnetin 3,7-dirhamnosideKaempferol 3-neohesperidoside-7-rhamnosideQuercetin 3-O-glucoside-7-O-rhamnosideepicatechin heptamer4'-MethylluteolinIsorhamnetin 3-neohesperidosideProcyanidin C1Naringenin chalconeIsorhamnetinCyanidin 3-(6-p-coumaroylsambubioside)PopulninKaempferol 3-alpha-L-arabinofuranoside-7-rhamnosideNaringeninAcacetinKaempferol 7-neohesperidosideCharcone isomeraseCharcone isomeraseCharcone isomerase


Description

Pathway describing the flavonoid biosynthesis.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
117248view09:59, 19 May 2021EweitzModified title
111815view19:09, 8 September 2020EgonwMatched the data source with the given identifier.
105896view11:36, 16 August 2019MkutmonHMDB identifier normalization
102643view07:49, 16 January 2019TokimatsuReverted to version '2018年3月5日 (月) 08:39' by Tokimatsu
102642view07:47, 16 January 2019TokimatsuFix interactions
102641view07:40, 16 January 2019TokimatsuFixed connections.
102640view07:26, 16 January 2019Tokimatsuremove reactions/metabolites undiscovered from Brassicaceae. Add reaction IDs.
102639view07:19, 16 January 2019Tokimatsuremove reactions/metabolites undiscovered from Brassicaceae. Add reaction IDs.
96282view08:39, 5 March 2018EgonwNot a chemical conversion.
82871view16:28, 10 November 2015JmeliusCorrect outdated id
78382view10:22, 7 January 2015MaintBotadded missing graphIds
76240view08:49, 21 June 2014SbohlerGrouped cytosolic malic enzymes 1, 2, and 3.
76235view06:19, 20 June 2014SbohlerCoorected myrosinase annotations (vacuole)
76234view15:37, 19 June 2014AnweshaAnnotated some nodes
75849view09:02, 11 June 2014SbohlerModified description
75847view04:59, 11 June 2014EgonwAdded two more missing metabolite IDs.
75846view04:50, 11 June 2014EgonwAdded missing database names for two protein IDs.
75331view14:45, 19 May 2014SbohlerMoved apoplastic protein out of the cell border.
75330view14:42, 19 May 2014SbohlerParts added to the pathway, including RNA for PLC1,2, NAD-ME1,2, NADP-ME2.
74123view20:17, 31 March 2014EgonwRemoved the list of Uniprot identifiers from the Xref, which can hold only one.
74122view20:16, 31 March 2014EgonwCopied the multiple identifiers to the comment field.
71812view18:17, 18 October 2013EgonwAdded a bunch of missing metabolite identifiers.
71448view19:14, 17 October 2013MaintBotAutomated update of data sources
65321view18:01, 6 June 2013SbohlerPeriodical save, work in progress
65316view17:51, 6 June 2013Sbohlerwork in progress
65312view17:40, 6 June 2013SbohlerPeriodical save, work in progress
65024view21:00, 4 June 2013MaintBotOntology Term : 'glycolysis pathway' added !
65023view21:00, 4 June 2013MaintBotOntology Term : 'Krebs cycle pathway' added !
65022view20:59, 4 June 2013MaintBotModified categories
62875view12:56, 3 May 2013SbohlerModified description
62874view12:54, 3 May 2013SbohlerModified description
62873view12:50, 3 May 2013SbohlerNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(+)-epicatechinMetaboliteC00000956 (KNApSAcK)
3-O-MethylquercetinMetaboliteC00004632 (KNApSAcK)
4'-MethylluteolinMetaboliteC00001036 (KNApSAcK)
5,7-DimethoxyapigeninMetabolite
6-HydroxluteolinMetaboliteC00003884 (KNApSAcK)
6-MethoxyluteolinMetaboliteC00003885 (KNApSAcK)
AcacetinMetaboliteC00003820 (KNApSAcK)
AfzelechinMetaboliteC00000937 (KNApSAcK)
AfzelinMetaboliteC00005140 (KNApSAcK)
Apigenin 7,4'-dimethyl etherMetaboliteC00001016 (KNApSAcK)
Apigenin 7-rutinosideMetaboliteC00004156 (KNApSAcK)
ApigeninMetaboliteC00003817 (KNApSAcK)
AstragalinMetaboliteC00005138 (KNApSAcK)
Chalcone synthaseGeneProductAT5G13930 (Gramene Arabidopsis)
Charcone isomeraseGeneProductAT3G55120 (KEGG Genes)
Charcone isomeraseGeneProductAT5G05270 (Gramene Arabidopsis)
Charcone isomeraseGeneProductAT5G66220 (KEGG Genes)
Cinnamtannin A1MetaboliteC00009107 (KNApSAcK)
CosmosiinMetaboliteC00001017 (KNApSAcK)
Cyanidin 3,5-di-O-glucosideMetaboliteC00002378 (KNApSAcK)
Cyanidin 3-(6''-(E)-p-coumarylsambubioside)-5-glucosideMetaboliteC00006836 (KNApSAcK)
Cyanidin 3-(6''-p-coumaryl-2'''-sinapylsambubioside)-5-(6-malonylglucoside)MetaboliteC00006838 (KNApSAcK)
Cyanidin 3-(6-p-coumaroylglucoside)-5-(6-malonylglucoside)MetaboliteC00006824 (KNApSAcK)
Cyanidin 3-(6-p-coumaroylglucoside)-5-glucosideMetaboliteC00006819 (KNApSAcK)
Cyanidin 3-(6-p-coumaroylglucoside)MetaboliteC00006800 (KNApSAcK)
Cyanidin 3-(6-p-coumaroylsambubioside)MetaboliteC00006802 (KNApSAcK)
Cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) 6''-O-(p-O-(glucosyl) p-coumaroyl) glucoside] 5-O-glucosideMetaboliteC00007661 (KNApSAcK)
Cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) 6''-O-(p-coumaroyl) glucoside] 5-O-glucosideMetaboliteC00007660 (KNApSAcK)
Cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl) xylosyl) glucoside] 5-O-glucosideMetaboliteC00007656 (KNApSAcK)
Cyanidin 3-O-[2''-O-(xylosyl) 6''-O-(p-O-(glucosyl) p-coumaroyl) glucoside] 5-O-[6'''-O-(malonyl) glucoside]MetaboliteC00007659 (KNApSAcK)
Cyanidin 3-O-[2''-O-(xylosyl) glucoside] 5-O-(6'''-O-malonyl) glucosideMetaboliteC00007655 (KNApSAcK)
Cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-O-(glucosyl)-p-coumaroyl) glucoside] 5-O-glucosideMetaboliteC00007658 (KNApSAcK)
Cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-malonylglucosideMetaboliteC00007657 (KNApSAcK)
Cyanidin 3-O-[2-O-(2-O-(sinapoyl)-bata-D-xylopyranosyl) 6-O-(4-O-(beta-D-glucopyranosyl)-p-coumaroyl-bata-D-glucopyranoside] 5-O-[6-O-(malonyl) bata-D-glucopyranoside]MetaboliteC00007570 (KNApSAcK)
Cyanidin 3-glucosideMetaboliteC00002374 (KNApSAcK)
Cyanidin 3-sambubioside-5-glucosideMetaboliteC00006673 (KNApSAcK)
Cyanidin 3-sophorosideMetaboliteC00006658 (KNApSAcK)
CyanidinMetabolite128861 (PubChem-compound)
Cyanidine 3-sambubiosideMetaboliteC00006657 (KNApSAcK)
DihydrokaempferolMetaboliteC00974 (KEGG Compound)
DihydroquercetinMetaboliteC00000677 (KNApSAcK)
Diosmetin 7-glucosideMetaboliteC00004357 (KNApSAcK)
Diosmetin 7-neohesperidosideMetaboliteC00004508 (KNApSAcK)
Diosmetin 7-rutinosideMetaboliteC00004362 (KNApSAcK)
EpiafzelechinMetabolite
Epicatechin-(4beta->8)5-epicatechinMetaboliteC00002918 (KNApSAcK)
EriodictyolMetaboliteC00000960 (KNApSAcK)
GenkwaninMetaboliteC00001043 (KNApSAcK)
Hesperetin 7-glucosideMetaboliteC00008297 (KNApSAcK)
Hesperetin 7-neohesperidosideMetaboliteC00000987 (KNApSAcK)
HesperetinMetaboliteC00000968 (KNApSAcK)
HesperidinMetaboliteC00000970 (KNApSAcK)
Hirsutrin, Quercetin 3-GlucosideMetaboliteC00005373 (KNApSAcK)
HomoeriodictyolMetaboliteC00000969 (KNApSAcK)
Isorhamnetin 3,7-dirhamnosideMetaboliteC00005559 (KNApSAcK)
Isorhamnetin 3-O-beta-D-glucopyranosideMetaboliteC00005525 (KNApSAcK)
Isorhamnetin 3-O-beta-glucopyranoside-7-O-alpha-rhamnopyranosideMetaboliteC00005557 (KNApSAcK)
Isorhamnetin 3-O-rutinosideMetaboliteC00005548 (KNApSAcK)
Isorhamnetin 3-alpha-L-arabinopyranoside-7-rhamnosideMetaboliteC00005551 (KNApSAcK)
Isorhamnetin 3-arabinosideMetaboliteC00005522 (KNApSAcK)
Isorhamnetin 3-neohesperidoside-7-rhamnosideMetabolite
Isorhamnetin 3-neohesperidosideMetaboliteC00005547 (KNApSAcK)
Isorhamnetin 3-rhamnoside-7-glucosideMetaboliteC00005558 (KNApSAcK)
Isorhamnetin 3-rhamnosideMetaboliteC00005526 (KNApSAcK)
IsorhamnetinMetaboliteC00004635 (KNApSAcK)
Kaempferol 3,7-di-O-rhamnosideMetaboliteC00005189 (KNApSAcK)
Kaempferol 3,7-diglucosideMetaboliteC00005182 (KNApSAcK)
Kaempferol 3-O-rhamninosideMetaboliteC00005202 (KNApSAcK)
Kaempferol 3-O-rutinosideMetaboliteC00005169 (KNApSAcK)
Kaempferol 3-alpha-L-arabinofuranoside-7-rhamnosideMetaboliteC00005174 (KNApSAcK)
Kaempferol 3-arabinosideMetaboliteC00005132 (KNApSAcK)
Kaempferol 3-galactoside-7-rhamnosideMetaboliteC00005178 (KNApSAcK)
Kaempferol 3-galactosideMetaboliteC00005137 (KNApSAcK)
Kaempferol 3-gentiobiosideMetaboliteC00005166 (KNApSAcK)
Kaempferol 3-glucoside-(1->6)-glucoside-7-alpha-L-rhamnosideMetaboliteC00005234 (KNApSAcK)
Kaempferol 3-glucoside-7-rhamnosideMetaboliteC00005184 (KNApSAcK)
Kaempferol 3-neohesperidoside-7-rhamnosideMetaboliteC00005237 (KNApSAcK)
Kaempferol 3-neohesperidosideMetaboliteC00005167 (KNApSAcK)
Kaempferol 3-rhamnoside-7-glucosideMetaboliteC00005188 (KNApSAcK)
Kaempferol 3-robinoside (K 3-(6''-RhaGal))MetaboliteC00005160 (KNApSAcK)
Kaempferol 7-neohesperidosideMetaboliteC00005197 (KNApSAcK)
KaempferolMetabolite5280863 (PubChem-compound)
LeucocyanidinMetaboliteC00007235 (KNApSAcK)
LeucopelargonidinMetaboliteC00020638 (KNApSAcK)
Luteolin 3',7-diglucosideMetaboliteC00004290 (KNApSAcK)
Luteolin 4',7-diglucosideMetaboliteC00004294 (KNApSAcK)
Luteolin 4'-glucosideMetaboliteC00004276 (KNApSAcK)
Luteolin 5,7-diglucosideMetabolite
Luteolin 7-glucosideMetaboliteC00004266 (KNApSAcK)
LuteolinMetaboliteC00000674 (KNApSAcK)
Naringenin 4'-O-glucosideMetaboliteC00008208 (KNApSAcK)
Naringenin chalconeMetabolite5280960 (PubChem-compound)
NaringeninMetaboliteC00000982 (KNApSAcK)
NaringinMetaboliteC00000983 (KNApSAcK)
PelargonidinMetaboliteC00007232 (KNApSAcK)
PopulninMetaboliteC00005149 (KNApSAcK)
Procyanidin B2MetaboliteC00009077 (KNApSAcK)
Procyanidin C1MetaboliteC00009098 (KNApSAcK)
PruninMetaboliteC00000998 (KNApSAcK)
Quercetin 3,7-diglucosideMetaboliteC00005427 (KNApSAcK)
Quercetin 3,7-dirhamnosideMetaboliteC00005432 (KNApSAcK)
Quercetin 3-Arabinoside-7-rhamnosideMetaboliteC00005420 (KNApSAcK)
Quercetin 3-O-L-rhamnosideMetaboliteC00005374 (KNApSAcK)
Quercetin 3-O-alpha-L-arabinopyranosideMetaboliteC00005368 (KNApSAcK)
Quercetin 3-O-glucoside-7-O-rhamnosideMetaboliteC00005428 (KNApSAcK)
Quercetin 3-neohesperidoside-7-rhamnosideMetaboliteC00005470 (KNApSAcK)
Quercetin 3-neohesperidosideMetaboliteC00005412 (KNApSAcK)
Quercetin 3-rhamnoside-7-glucosideMetaboliteC00005431 (KNApSAcK)
Quercetin 3-rutinoside-7-rhamnosideMetaboliteC00005473 (KNApSAcK)
Quercetin 7-glucosideMetaboliteC00005382 (KNApSAcK)
QuercetinMetaboliteC00004631 (KNApSAcK)
RutinMetaboliteC00005413 (KNApSAcK)
Scutellarein 7-glucuronideMetaboliteC00004221 (KNApSAcK)
ScutellareinMetaboliteC00003834 (KNApSAcK)
TilirosideMetaboliteC00005851 (KNApSAcK)
[Epicatechin-(4beta->8)]4-epicatechinMetaboliteC00009109 (KNApSAcK)
catechinMetaboliteC00000947 (KNApSAcK)
epicatechin heptamerMetabolite
p-Coumaroyl-CoAMetaboliteC00223 (KEGG Compound)

Annotated Interactions

View all...
SourceTargetTypeDatabase referenceComment
ApigeninAcacetinmim-conversionR03571 (KEGG Reaction)
ApigeninCosmosiinmim-conversionR03574 (KEGG Reaction)
ApigeninLuteolinmim-conversionR06537 (KEGG Reaction)
Cyanidin 3-(6-p-coumaroylglucoside)-5-glucosideCyanidin 3-(6-p-coumaroylglucoside)-5-(6-malonylglucoside)mim-conversionR07910 (KEGG Reaction)
Cyanidin 3-(6-p-coumaroylglucoside)Cyanidin 3-(6-p-coumaroylglucoside)-5-glucosidemim-conversionR06547 (KEGG Reaction)
Cyanidin 3-glucosideCyanidin 3,5-di-O-glucosidemim-conversionR06545 (KEGG Reaction)
Cyanidin 3-glucosideCyanidin 3-(6-p-coumaroylglucoside)mim-conversionR06544 (KEGG Reaction)
Cyanidin 3-glucosideCyanidin 3-sophorosidemim-conversionR07878 (KEGG Reaction)
Cyanidin 3-glucosideCyanidine 3-sambubiosidemim-conversionR10291 (KEGG Reaction)
Cyanidin(+)-epicatechinmim-conversionR06542 (KEGG Reaction)
CyanidinCyanidin 3-glucosidemim-conversionR06535 (KEGG Reaction)
Cyanidine 3-sambubiosideCyanidin 3-sambubioside-5-glucosidemim-conversionR10294 (KEGG Reaction)
DihydrokaempferolDihydroquercetinmim-conversionR03124 (KEGG Reaction)
DihydrokaempferolKaempferolmim-conversionR03126 (KEGG Reaction)
DihydrokaempferolLeucopelargonidinmim-conversionR03123 (KEGG Reaction)
DihydroquercetinLeucocyanidinmim-conversionR03636 (KEGG Reaction)
DihydroquercetinQuercetinmim-conversionR02160 (KEGG Reaction)
EriodictyolDihydroquercetinmim-conversionR03640 (KEGG Reaction)
EriodictyolLuteolinmim-conversionR03590 (KEGG Reaction)
Hesperetin 7-glucosideHesperetin 7-neohesperidosidemim-conversionR08022 (KEGG Reaction)
HesperetinHesperetin 7-glucosidemim-conversionR08021 (KEGG Reaction)
Hirsutrin, Quercetin 3-GlucosideRutinmim-conversionR04900 (KEGG Reaction)
KaempferolAfzelinmim-conversionR09802 (KEGG Reaction)
KaempferolAstragalinmim-conversionR06611 (KEGG Reaction)
KaempferolKaempferol 3-galactosidemim-conversionR06808 (KEGG Reaction)
KaempferolQuercetinmim-conversionR06538 (KEGG Reaction)
LeucocyanidinCyanidinmim-conversionR05036 (KEGG Reaction)
Leucocyanidincatechinmim-conversionR06532 (KEGG Reaction)
LeucopelargonidinAfzelechinmim-conversionR06615 (KEGG Reaction)
LeucopelargonidinPelargonidinmim-conversionR04276 (KEGG Reaction)
LuteolinLuteolin 7-glucosidemim-conversionR03588 (KEGG Reaction)
Naringenin chalconeNaringeninmim-conversionR02446 (KEGG Reaction)
NaringeninApigeninmim-conversionR02445 (KEGG Reaction)
NaringeninDihydrokaempferolmim-conversionR02444 (KEGG Reaction)
NaringeninEriodictyolmim-conversionR02442 (KEGG Reaction)
NaringeninNaringenin 4'-O-glucosidemim-conversionR08006 (KEGG Reaction)
NaringeninPruninmim-conversionR02897 (KEGG Reaction)
PelargonidinEpiafzelechinmim-conversionR06541 (KEGG Reaction)
PruninNaringinmim-conversionR06820 (KEGG Reaction)
Quercetin 3-O-L-rhamnosideQuercetin 3-rhamnoside-7-glucosidemim-conversionR09804 (KEGG Reaction)
Quercetin3-O-Methylquercetinmim-conversionR02157 (KEGG Reaction)
QuercetinHirsutrin, Quercetin 3-Glucosidemim-conversionR02158 (KEGG Reaction)
QuercetinQuercetin 3-O-L-rhamnosidemim-conversionR09803 (KEGG Reaction)
p-Coumaroyl-CoANaringenin chalconemim-conversionR01613 (KEGG Reaction)
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