Combined Pathways (Network) for Cellulose Digestion (Clostridium thermocellum)

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1ABC Transporter3L-Lactate Dehydrogenase PyruvateLactateAcetylCoACelluloseCellobioseD-GlucoseGlucose-6-PhosphateFructose-6-PhosphateFructose-1,6-BiphosphateGlyceraldehyde 3-phosphateDihydroxyacetone phosphateBisphosphoglyceric acid3-Phosphoglyceric acid2-Phosphoglyceric acidphosphoenolpyruvateEndoglucanase2Cellobiose PhosphorylaseGlucokinaseGlucose-6-phosphate IsomerasePhosphofructokinaseFructose-bisphosphate AldolaseGlyceraldehyde-3-Phosphate DehydrogenseTriosephosphate IsomerasePhosphoglycerate KinasePhosphoglycerate MutasePhosphopyruvate HydratasePyruvate Phosphate DikinasePyruvate:fd OxioreductaseAcetyl-PPhosphotransacetylaseEthanolAcetaldhyde Dehydrogenase/Alcohol Dehydrogenase Ferredoxin - OxFerodoxin - ReFerrodoxin hydrogenaseH2NADH dehydrogenase (quinone)H+NADP+NADPHFormatePyruvate: formate lyaseNADP+NADP+NADPHNADPHATPADPATPADPNADP+NADPHATPADPATPADPAcetateAcetate KinaseATPADPPiα-D-glucose 1-phosphateα-PhosphoglucomutaseCellotrioseD-CellotetraoseCellobioseCellotrioseD-CellotetraoseInnermembrane TranslocatorInner-membrane translocatorbinding-proteinbinding-proteinbinding-proteinbinding-proteinABC-type sugarCelluloseCellulose


Description

No description

Comments

 
Metabolically deduced pathway of pyruvate catabolism in Clositridium thermocellum ATCC 27405.

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Quality Tags

Ontology Terms

 

Bibliography


History

View all...
CompareRevisionActionTimeUserComment
50507view19:36, 16 August 2012MaintBotDeleted pathway: request by author; she plans to resubmit after publication
47939view20:38, 19 April 2012BjorklundFxing ABC transporter
47938view20:31, 19 April 2012BjorklundPeriodical save, work in progress
47937view20:28, 19 April 2012BjorklundFixing the ABC transporter
47735view17:45, 4 April 2012BjorklundAdded a reference to alpha phosphoglucomutase
47730view16:49, 4 April 2012BjorklundModified title
47673view19:14, 2 April 2012BjorklundModified description
47672view19:12, 2 April 2012BjorklundModified description
47662view18:20, 2 April 2012BjorklundModified title
46993view16:31, 9 March 2012BjorklundAdded missing Phosphoglycerate kinase
46976view18:44, 8 March 2012BjorklundPeriodical save, work in progress
46975view18:33, 8 March 2012BjorklundPeriodical save, work in progress
46883view20:45, 5 March 2012BjorklundTouchup
46882view20:42, 5 March 2012BjorklundPathway Completed First Draft
46872view18:55, 5 March 2012BjorklundPeriodical save, work in progress
46871view18:45, 5 March 2012BjorklundPeriodical save, work in progress
46870view18:28, 5 March 2012BjorklundPeriodical save, work in progress
46868view18:18, 5 March 2012BjorklundPeriodical save, work in progress
46867view18:08, 5 March 2012BjorklundPeriodical save, work in progress
46866view17:57, 5 March 2012BjorklundPeriodical save, work in progress
46865view17:47, 5 March 2012BjorklundPeriodical save, work in progress
46864view17:37, 5 March 2012BjorklundPeriodical save, work in progress
46863view17:17, 5 March 2012BjorklundPeriodical save, work in progress
46843view02:26, 3 March 2012AlexanderPicoReverted to version '12:19, 2 March 2012' by AlexanderPico
46842view02:18, 3 March 2012AlexanderPicoReverted to version '12:29, 2 March 2012' by AlexanderPico
46837view19:34, 2 March 2012BjorklundMore undating
46836view19:29, 2 March 2012BjorklundPeriodical save, work in progress
46835view19:19, 2 March 2012BjorklundPeriodical save, work in progress
46834view19:09, 2 March 2012BjorklundPeriodical save, work in progress
46833view18:59, 2 March 2012BjorklundPeriodical save, work in progress
46832view18:48, 2 March 2012BjorklundPeriodical save, work in progress
46831view18:38, 2 March 2012BjorklundPeriodical save, work in progress
46830view18:28, 2 March 2012BjorklundPeriodical save, work in progress
46829view18:18, 2 March 2012BjorklundPeriodical save, work in progress
46828view18:08, 2 March 2012BjorklundPeriodical save, work in progress
46827view17:37, 2 March 2012BjorklundPeriodical save, work in progress
46826view17:27, 2 March 2012BjorklundPeriodical save, work in progress
46825view17:17, 2 March 2012BjorklundPeriodical save, work in progress
46824view17:07, 2 March 2012BjorklundPeriodical save, work in progress
46823view16:45, 2 March 2012BjorklundPeriodical save, work in progress
46814view03:35, 2 March 2012BjorklundPeriodical save, work in progress
46809view00:03, 2 March 2012BjorklundContinuing to work on the pathways
46808view23:54, 1 March 2012BjorklundPeriodical save, work in progress
46807view23:43, 1 March 2012BjorklundPeriodical save, work in progress
46806view23:33, 1 March 2012BjorklundPeriodical save, work in progress
46805view23:23, 1 March 2012BjorklundPeriodical save, work in progress
46804view23:13, 1 March 2012BjorklundPeriodical save, work in progress
46803view23:03, 1 March 2012BjorklundPeriodical save, work in progress
46802view22:53, 1 March 2012BjorklundPeriodical save, work in progress
46801view22:43, 1 March 2012BjorklundPeriodical save, work in progress

External references

DataNodes

View all...
NameTypeDatabase referenceComment
2-Phosphoglyceric acidMetabolite2553-59-5 (CAS)
3-Phosphoglyceric acidMetabolite17794 (ChEBI)
ABC-type sugarProtein4809825 (Entrez Gene) Cthe 2446 ABC-type sugar transport system periplasmic component-like protein (D-ribose transport system ATP-binding protein)
ADPMetabolite58-64-0 (ChEBI)
ATPMetabolite56-65-5 (ChEBI)
Acetaldhyde Dehydrogenase/Alcohol Dehydrogenase GeneProduct4808426 (Entrez Gene)
Acetate KinaseGeneProduct4811322 (Entrez Gene) Enolase
AcetateMetabolite758-12-3 (CAS)
Acetyl-PMetabolite19926-71-7 (CAS)
AcetylCoAMetabolite72-89-9 (CAS)
Bisphosphoglyceric acidMetabolite1981-49-3 (CAS)
Cellobiose PhosphorylaseGeneProduct4808558 (Entrez Gene) Three enzymes, Entrez 4808558, Cthe 0275; Entrez 4811137; Cthe 2989; Entrez 4809913, Cthe 1221
CellobioseMetabolite17057 (ChEBI)
CellotrioseMetabolite33404-34-1 (CAS)
CelluloseMetabolite18246 (ChEBI)
D-CellotetraoseMetabolite38819-01-1 (CAS)
D-GlucoseMetabolite4146 (ChEBI)
Dihydroxyacetone phosphateMetabolite57-04-5 (CAS)
EndoglucanaseGeneProduct4808805 (Entrez Gene)
EthanolMetabolite64-17-5 (CAS)
Ferodoxin - ReGeneProduct4810104 (Entrez Gene) Enolase
Ferredoxin - OxGeneProduct4810104 (Entrez Gene) Enolase
Ferrodoxin hydrogenaseGeneProduct4811151 (Entrez Gene) Enolase
FormateMetabolite15740 (ChEBI)
Fructose-1,6-BiphosphateMetabolite488-69-7 (CAS)
Fructose-6-PhosphateMetabolite643-13-0 (CAS)
Fructose-bisphosphate AldolaseGeneProduct4808498 (Entrez Gene)
GlucokinaseGeneProduct4810221 (Entrez Gene) hexokinase
Glucose-6-PhosphateMetabolite4170 (ChEBI)
Glucose-6-phosphate IsomeraseGeneProduct4808635 (Entrez Gene)
Glyceraldehyde 3-phosphateMetabolite142-10-9 (CAS)
Glyceraldehyde-3-Phosphate DehydrogenseGeneProduct4808695 (Entrez Gene)
H+ Metabolite12408-02-5 (CAS)
H2Metabolite1333-74-0 (CAS)
Inner-membrane translocatorProtein4808395 (Entrez Gene)
Innermembrane TranslocatorProtein4809827 (Entrez Gene) Cthe 2448
L-Lactate Dehydrogenase GeneProduct4811351 (Entrez Gene)
LactateMetabolite16651 (ChEBI)
NADH dehydrogenase (quinone)GeneProduct4808357 (Entrez Gene) Enolase
NADP+Metabolite53-59-8 (CAS)
NADPHMetabolite53-59-8 (CAS)
PhosphofructokinaseGeneProduct4809766 (Entrez Gene)
Phosphoglycerate KinaseGeneProduct4808696 (Entrez Gene)
Phosphoglycerate MutaseGeneProduct4809544 (Entrez Gene)
Phosphopyruvate HydrataseGeneProduct4808701 (Entrez Gene) Enolase
PhosphotransacetylaseGeneProduct4811323 (Entrez Gene) Enolase
PiMetabolite14265-44-2 (CAS)
Pyruvate Phosphate DikinaseGeneProduct4809561 (Entrez Gene) Enolase
PyruvateMetabolite127-17-3 (CAS)
Pyruvate: formate lyaseGeneProduct4808306 (Entrez Gene)
Pyruvate:fd OxioreductaseGeneProduct4809683 (Entrez Gene) Enolase
Triosephosphate IsomeraseGeneProduct4808697 (Entrez Gene)
binding-proteinProtein4811172 (Entrez Gene)
  • Cthe 2125, binding-protein-dependent transport systems inner membrane component (permease component)
  • Type your comment here
binding-proteinProtein4811173 (Entrez Gene) Cthe 2126, binding-protein-dependent transport systems inner membrane component (permease component)
binding-proteinProtein4811312 (Entrez Gene)
  • Cthe 1018, binding-protein-dependent transport systems inner membrane component (sugar ABC transporter, permease protein)
  • Type your comment here
binding-proteinProtein4811313 (Entrez Gene)
  • Cthe 1019, binding-protein-dependent transport systems inner membrane component, putative transmembrane sugar transport protein
  • Type your comment here
phosphoenolpyruvateMetabolite138-08-9 (CAS)
α-D-glucose 1-phosphateMetabolite59-56-3 (CAS)
α-PhosphoglucomutaseGeneProduct4809770 (Entrez Gene)

Annotated Interactions

No annotated interactions
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