| Name | Type | Database reference | Comment | | AKT1 | GeneProduct | ENSG00000142208 (Ensembl)  |
| AMBRA1 | GeneProduct | ENSG00000110497 (Ensembl) |
| AMPK | GeneProduct | ENSG00000162409 (Ensembl) |
| ARNTL | GeneProduct | ENSG00000133794 (Ensembl) |
| ATG101 | GeneProduct | ENSG00000123395 (Ensembl) |
| ATG10 | GeneProduct | ENSG00000152348 (Ensembl) |
| ATG12 | GeneProduct | ENSG00000145782 (Ensembl) |
| ATG13 | GeneProduct | ENSG00000175224 (Ensembl) |
| ATG16L1 | GeneProduct | ENSG00000085978 (Ensembl) |
| ATG3 | GeneProduct | ENSG00000144848 (Ensembl) |
| ATG4C | GeneProduct | ENSG00000125703 (Ensembl) |
| ATG4 | GeneProduct | ENSG00000197548 (Ensembl) |
| ATG5 | GeneProduct | ENSG00000057663 (Ensembl) |
| ATG7 | GeneProduct | ENSG00000197548 (Ensembl) |
| BCL2 | GeneProduct | ENSG00000171791 (Ensembl) |
| BECN1 | GeneProduct | ENSG00000126581 (Ensembl) |
| BHLHE40 | GeneProduct | ENSG00000134107 (Ensembl) |
| BHLHE41 | GeneProduct | ENSG00000123095 (Ensembl) |
| BMP1 | GeneProduct | ENSG00000125845 (Ensembl) |
| BMP2 | GeneProduct | ENSG00000152785 (Ensembl) |
| BMP4 | GeneProduct | ENSG00000125378 (Ensembl) |
| BMP5 | GeneProduct | ENSG00000112175 (Ensembl) |
| BMP6 | GeneProduct | ENSG00000153162 (Ensembl) |
| BMP7 | GeneProduct | ENSG00000153162 (Ensembl) |
| BMP | Metabolite | CHEBI:60815 (ChEBI) |
| BMPR2 | GeneProduct | ENSG00000204217 (Ensembl) |
| CALCA | GeneProduct | ENSG00000110680 (Ensembl) |
| CHRD | GeneProduct | ENSG00000090539 (Ensembl) |
| CLOCK | GeneProduct | ENSG00000134852 (Ensembl) |
| CRY1 | GeneProduct | ENSG00000008405 (Ensembl) |
| CSF1 | GeneProduct | ENSG00000184371 (Ensembl) |
| CT-1 | GeneProduct | ENSG00000150281 (Ensembl) |
| CTHRC1 | GeneProduct | ENSG00000164932 (Ensembl) |
| CTSK | GeneProduct | ENSG00000143387 (Ensembl) |
| CX3CR1 | GeneProduct | ENSG00000008405 (Ensembl) |
| DKK1 | GeneProduct | ENSG00000107984 (Ensembl) |
| DRAM2 | GeneProduct | ENSG00000156171 (Ensembl) |
| EFNB2 | GeneProduct | ENSG00000125266 (Ensembl) |
| FYCO1 | GeneProduct | ENSG00000163820 (Ensembl) |
| HMGB1 | GeneProduct | ENSG00000189403 (Ensembl) |
| IGF1 | GeneProduct | ENSG00000017427 (Ensembl) |
| IL1/4/6/7 | GeneProduct | ENSG00000120659 (Ensembl) |
| IL3,6,7 | GeneProduct | ENSG00000164399 (Ensembl) |
| IL3 | GeneProduct | ENSG00000164399 (Ensembl) |
| IL6 | GeneProduct | ENSG00000136244 (Ensembl) |
| JAK2 | GeneProduct | ENSG00000096968 (Ensembl) |
| LAMP2 | GeneProduct | ENSG00000005893 (Ensembl) |
| LEP | GeneProduct | ENSG00000174697 (Ensembl) |
| LRP5 | GeneProduct | ENSG00000162337 (Ensembl) |
| MAP1LC3A | GeneProduct | ENSG00000101460 (Ensembl) |
| MAP1LC3B | GeneProduct | ENSG00000140941 (Ensembl) |
| MEPE | GeneProduct | ENSG00000152595 (Ensembl) |
| MMP9 | GeneProduct | ENSG00000008405 (Ensembl) |
| MTOR | GeneProduct | ENSG00000198793 (Ensembl) |
| NFATC1 | GeneProduct | ENSG00000131196 (Ensembl) |
| NOTCH1 | GeneProduct | ENSG00000148400 (Ensembl) |
| NPAS2 | GeneProduct | ENSG00000170485 (Ensembl) |
| NR1D2 | GeneProduct | ENSG00000174738 (Ensembl) |
| OPG | GeneProduct | ENSG00000164761 (Ensembl) |
| P115 | GeneProduct | ENSG00000089820 (Ensembl) |
| PER1 | GeneProduct | ENSG00000179094 (Ensembl) |
| PIK3C3 | GeneProduct | ENSG00000078142 (Ensembl) |
| PLEKHM1 | GeneProduct | ENSG00000225190 (Ensembl) |
| PTH | GeneProduct | ENSG00000152266 (Ensembl) |
| RANK | GeneProduct | ENSG00000120659 (Ensembl) |
| RANKL | GeneProduct | ENSG00000141655 (Ensembl) |
| RB1CC1 | GeneProduct | ENSG00000023287 (Ensembl) |
| RORB | GeneProduct | ENSG00000198963 (Ensembl) |
| RUNX2 | GeneProduct | ENSG00000124813 (Ensembl) |
| Rev-Erb | GeneProduct | ENSG00000008405 (Ensembl) |
| S1P | Metabolite | CHEBI:37550 (ChEBI) |
| SEMA3A | GeneProduct | ENSG00000075213 (Ensembl) |
| SEMA4D | GeneProduct | ENSG00000187764 (Ensembl) |
| SERPINF1 | GeneProduct | ENSG00000132386 (Ensembl) |
| SMAD1 | GeneProduct | ENSG00000170365 (Ensembl) |
| SMAD4 | GeneProduct | ENSG00000141646 (Ensembl) |
| SMAD5 | GeneProduct | ENSG00000113658 (Ensembl) |
| SMAD8 | GeneProduct | ENSG00000120693 (Ensembl) |
| SOST | GeneProduct | ENSG00000167941 (Ensembl) |
| SP7 | GeneProduct | ENSG00000170374 (Ensembl) |
| SQSTM1 | GeneProduct | ENSG00000161011 (Ensembl) |
| TGFB1 | GeneProduct | ENSG00000105329 (Ensembl) |
| TNF-a | GeneProduct | ENSG00000120659 (Ensembl) |
| TRAF6 | GeneProduct | ENSG00000175104 (Ensembl) |
| TRAP | GeneProduct | ENSG00000126602 (Ensembl) |
| ULK1 | GeneProduct | ENSG00000177169 (Ensembl) |
| VCP | GeneProduct | ENSG00000165280 (Ensembl) |
| WNT10B | GeneProduct | ENSG00000169884 (Ensembl) |
| WNT10a | GeneProduct | ENSG00000114251 (Ensembl) |
| WNT16 | GeneProduct | ENSG00000002745 (Ensembl) |
| WNT5A | GeneProduct | ENSG00000114251 (Ensembl) |
| WNT6 | GeneProduct | ENSG00000114251 (Ensembl) |
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