WikiPathways

From WikiPathways

(Difference between revisions)

Current revision

This website is now Read-Only

Visit https://wikipathways.org to see the new version of WikiPathways. This is the "classic" version of WikiPathways will shutdown on May 1st.
Webservice users: If you are still using the old web service, please contact us immediately so we can help you transition.
Curators: PathVisio upload is temporarily unavailable. Please reach out if you need to upload or update a pathway.

Find Pathways

Search

Browse

Browse by species and category

You can search by:

Pathway name (Apoptosis)
Gene or protein name (p53)
Any page content (cancer)

Get Pathways

	Download Multiple formats and methods			Growth New pathways added each month

Edit Pathways

	Learn Play with the editor tools			Request Queue figures for conversion

Updates

This is the "classic" version of WikiPathways will shutdown on May 1st and is now read-only.
April 2026 Release: 71 edits by 7 contributors and 2 new pathways.
March 2026 Release: 45 edits by 5 contributors and no new pathways.
February 2026 Release: 95 edits by 9 contributors and no new pathways.
January 2026 Release: 134 edits by 3 contributors and no new pathways.
December 2025 Release: 840 edits by 8 contributors and 9 new pathways.
November 2025 Release: 686 edits by 6 contributors and 10 new pathways.
October 2025 Release: 129 edits by 10 contributors and 5 new pathways.

Discussions

No recent changes more...

Forum

Google group wikipathways-discuss

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-__NOEDITSECTION__ <!-- Turn off section editing -->
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 <!-- Special Notice Section-->
-<!--|-valign="top"
+<!--
+|-valign="top"
 |colspan="8"|<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
-<h2 class="frontPagePanel yellowFg">2015-Sep-01: Technical issues.</h2>
+<h2 class="frontPagePanel yellowFg">11 April 2019: Scheduled Downtime</h2>
-<font size=2>'''We are currently experiencing some technical issues, so some pages are not accessible. We are working hard to fix those issues. Sorry for any inconveniences.'''</font></div>-->
+<font size=2>'''We will be taking the site down for an hour at 24:00UTC on April 11th. We are switching over to new and improved infrastructure! Sorry for any inconveniences.'''</font></div>
+-->
+<!-- TECHNICAL DIFFICULTIES -->
+<!--
 |-valign="top"
 |colspan="8"|<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
-<font size=3>'''How do you use WikiPathways?  A quick survey to help us focus development and renew funding.  [https://www.surveymonkey.com/r/wikipathways https://www.surveymonkey.com/r/wikipathways]'''</font></div>
+<h2 class="frontPagePanel yellowFg">2015-Sep-01: Technical issues.</h2>
+<font size=2>'''We are currently experiencing some technical issues, so some pages are not accessible. We are working hard to fix those issues. Sorry for any inconveniences.'''</font></div>
+-->
+<!-- ANNOUNCEMENTS -->
+<!--
+|-valign="top" align="center"
+|colspan="8"|<div class="frontPagePanel redBg" style="width:95%;margin:1em;width=100%">
+<h2 class="frontPagePanel redFg">Share your pathway knowledge in the fight against COVID-19</h2>
+<font size=2>'''''ACCESS'' the rapidly growing [[Portal:COVID-19|collection of COVID-19 pathways]], ''CONTRIBUTE'' your time and domain knowledge about pathway biology as a [[Help:Authors|pathway author]], and ''USE'' these pathways in [[Help:Tools_using_WikiPathways|your research]].'''</font></div>
+-->
+<!-- Page Content -->
 |-valign="top"
-|<div class="frontPagePanel redBg" style="width:95%;margin:1em;width=100%">
+|<div class="frontPagePanel greenBg" style="width:95%;margin:1em;width=100%">
-<h2 class="frontPagePanel redFg">Welcome to WikiPathways <sup>BETA</sup></h2>
+<h2 class="frontPagePanel greenFg">This website is now Read-Only</h2>
-<font size=2>'''WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. [[WikiPathways:About|More about WikiPathways...]]'''</font></div>
+<font size=2>'''Visit https://wikipathways.org to see the new version of WikiPathways.''' This is the "classic" version of WikiPathways will shutdown on May 1st.<br />
+<b>Webservice users</b>: If you are still using the old web service, please [https://github.com/wikipathways/wikipathways-help/discussions contact us immediately] so we can help you transition.<br />
+<b>Curators</b>: PathVisio upload is temporarily unavailable. Please [https://github.com/wikipathways/wikipathways-help/discussions reach out] if you need to upload or update a pathway.
+</font></div>
 <div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
-<h2 class="frontPagePanel blueFg">Finding Pathways</h2>
+<h2 class="frontPagePanel blueFg">Find Pathways</h2>
 {|style="width:100%;" border="0" valign="top" cellspacing="2" cellpadding="1" align="center"
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 |rowspan="2" align="center" style="width:25%;"|
 |rowspan="2" align="center" style="width:25%;"|
-|rowspan="2" align="center" valign="top"|<big>'''Browse'''</big>{{#imgLink:Browse_thumb_200.jpg|200|center||special|BrowsePathwaysPage|Browse}}
+|rowspan="2" align="center" valign="top"|<big>'''Browse'''</big>{{#imgLink:Browse_thumb.png|200|center||special|BrowsePathwaysPage|Browse}}
 '''Browse by species and category'''
 |rowspan="2" align="center" style="width:25%;"|
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 |}
-<h2 class="frontPagePanel blueFg">Contributing New Pathways</h2>
+<h2 class="frontPagePanel blueFg">Get Pathways</h2>
 {|style="width:100%;" border="0" valign="top" cellspacing="2" cellpadding="1" align="center"
 |-
 |rowspan="1" align="center" style="width:25%;"|
-|align="center" valign="top"|<big>'''Create'''</big>{{#imgLink:Create_thumb_160.jpg|160|center||special|CreatePathwayPage|Create}}
+|align="center" valign="top"|<big>'''Download'''</big>{{#imgLink:Download_label.png|215|center|||Download_Pathways|Download}}
-'''Create a new pathway page'''
+'''Multiple formats and methods'''
 |rowspan="1" align="center" style="width:25%;"|
 |rowspan="1" align="center" style="width:25%;"|
-|rowspan="1" align="center" valign="top"|<big>'''Suggest'''</big>{{#imgLink:Wishlist_thumb_200.jpg|200|center||special|SpecialWishList|Wish list}}
+|rowspan="1" align="center" valign="top"|<big>'''Growth'''</big>{{#imgLink:Wp_growth_label.png|200|center|||WikiPathways:Statistics|Growth}}
-'''Add a pathway to the wish list'''
+'''New pathways added each month'''
 |rowspan="1" align="center" style="width:25%;"|
 |-
@@ Line 52: / Line 68: @@
 |}
-<h2 class="frontPagePanel blueFg">Sample Pathway Pages</h2>
+<h2 class="frontPagePanel blueFg">Edit Pathways</h2>
 {|style="width:100%;" border="0" valign="top" cellspacing="2" cellpadding="1" align="center"
 |-
-|rowspan="1" align="center" style="width:4%;"|
+|rowspan="1" align="center" style="width:25%;"|
-|rowspan="1" align="center" valign="top" style="width:45%;"|<big>'''Sandbox'''</big>{{#imgLink:Sandbox_thumb_200.jpg|200|center||pathway|WP4|Sandbox}}
+|align="center" valign="top"|<big>'''Learn'''</big>{{#imgLink:AcademyPath.png|200|center||external|http://academy.wikipathways.org|WikiPathways Academy}}
 '''Play with the editor tools'''
-|rowspan="1" align="center" style="width:4%;"|
+|rowspan="1" align="center" style="width:25%;"|
-|rowspan="1" align="center" style="width:1%;"|
+|rowspan="1" align="center" style="width:25%;"|
-|align="left" valign="top" style="width:45%;"|
+|align="center" valign="top"|<big>'''Request'''</big>{{#imgLink:RequestForm2.png|210|center||external|https://github.com/wikipathways/pathway-curation-tasks/issues|Figure Conversion}}
-'''Check out the following pages:'''<br>
+'''Queue figures for conversion'''
-* [[Special:RecentPathwayChanges | Show recent changes]]
+|rowspan="1" align="center" style="width:25%;"|
-* [[Special:NewPathwaysPage | Show new pathways]]
-* [[Special:MostEditedPathwaysPage | Show most edited pathways]]
-* [[Special:PopularPathwaysPage | Show most viewed pathways]]
-* [[Special:SpecialWishList | Show pathway wish list]]
-* [http://wikipathways.tumblr.com/ Selected publications using WikiPathways].
-'''For more information see the [[Help:Contents |Help pages]]'''
-|rowspan="1" align="center" style="width:1%;"|
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-<div class="frontPagePanel greenBg" style="width:90%;margin:1em;width=100%;">
+<div class="frontPagePanel blueBg" style="width:90%;margin:1em;width=100%;">
-<h2 class="frontPagePanel greenFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:FeaturedPathway | true}}
+<!--<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:CurrentHighlight | true}} -->
-<h2 class="frontPagePanel greenFg">News</h2>
+<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
-* Check out the new [http://dx.doi.org/10.1093/nar/gkv1024 WikiPathways paper] published January 2016 in NAR.
+* '''This is the "classic" version of WikiPathways will shutdown on May 1st and is now read-only.'''
-* Read about the Reactome pathways on this site in this [http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004941 PLOS Comput Bio] paper published May 2016.
+* '''April 2026 Release''': [[Special:RecentPathwayChanges|71 edits]] by [[WikiPathways:Statistics#Contribution_scores|7 contributors]] and [https://www.wikipathways.org/browse/new.html 2 new pathways].
-* And this Resource Description Framework API is described in this [http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004989 PLOS Comput Bio] paper published June 2016.
+* '''March 2026 Release''': [[Special:RecentPathwayChanges|45 edits]] by [[WikiPathways:Statistics#Contribution_scores|5 contributors]] and [https://www.wikipathways.org/browse/new.html no new pathways].
-<h2 class="frontPagePanel greenFg">Latest discussions</h2><recentChanges class="greenBg" style="border:none" namespace='90' limit='3'></recentChanges>&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Discussions|more...]]
+* '''February 2026 Release''': [[Special:RecentPathwayChanges|95 edits]] by [[WikiPathways:Statistics#Contribution_scores|9 contributors]] and [https://www.wikipathways.org/browse/new.html no new pathways].
-<h2 class="frontPagePanel greenFg">Forum</h2><rss>http://groups.google.com/group/wikipathways-discuss/feed/rss_v2_0_msgs.xml|short|max=3</rss>&nbsp;&nbsp;&nbsp;&nbsp;[http://groups.google.com/group/wikipathways-discuss Google group wikipathways-discuss]
+* '''January 2026 Release''': [[Special:RecentPathwayChanges|134 edits]] by [[WikiPathways:Statistics#Contribution_scores|3 contributors]] and [https://www.wikipathways.org/browse/new.html no new pathways].
-<h2 class="frontPagePanel greenFg">Activity</h2>
+* '''December 2025 Release''': [[Special:RecentPathwayChanges|840 edits]] by [[WikiPathways:Statistics#Contribution_scores|8 contributors]] and [https://www.wikipathways.org/browse/new.html 9 new pathways].
-* Check our [[Special:TissueAnalyzer|TissueAnalyzer page]] to study pathway activity in different tissues.
+* '''November 2025 Release''': [[Special:RecentPathwayChanges|686 edits]] by [[WikiPathways:Statistics#Contribution_scores|6 contributors]] and [https://www.wikipathways.org/browse/new.html 10 new pathways].
-* Want to add your ORCID id to your WikiPathways account? [http://wikipathways.org/index.php/Template:User_ORCID Find out how to do it!]
+* '''October 2025 Release''': [[Special:RecentPathwayChanges|129 edits]] by [[WikiPathways:Statistics#Contribution_scores|10 contributors]] and [https://www.wikipathways.org/browse/new.html 5 new pathways].
-* [[PathwayWidget|Include an interactive pathway image]] on your own blog/website
+<h2 class="frontPagePanel blueFg">Discussions</h2><recentChanges class="blueBg" style="border:none" namespace='90' limit='2'></recentChanges>&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Discussions|more...]]
-* [[WikiPathways:Statistics|Curation statistics]]
+<h2 class="frontPagePanel blueFg">Forum</h2><rss>https://groups.google.com/group/wikipathways-discuss/feed/rss_v2_0_msgs.xml|short|max=2</rss>&nbsp;&nbsp;&nbsp;&nbsp;[http://groups.google.com/group/wikipathways-discuss Google group wikipathways-discuss]
-<h2 class="frontPagePanel greenFg">Community Interest</h2>
-Portals within WikiPathways for communities with focused pathway interests:
-* [[Portal:WormBase|WormBase]] pathways
-* [[Portal:ExRNA|ExRNA]] related pathways
-Want to start your own Portal? [[Contact_Us|Contact us!]]
 </div>
 |}
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+__NOTOC__ <!-- Turn off Table of Contents  -->

WikiPathways

From WikiPathways

Current revision

This website is now Read-Only

Find Pathways

Get Pathways

Edit Pathways

Updates

Discussions

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