WikiPathways

From WikiPathways

(Difference between revisions)
Jump to: navigation, search
Current revision (15:33, 11 April 2026) (view source)
 
(653 intermediate revisions not shown.)
Line 1: Line 1:
-
<analytics uacct="UA-1605246-1" ></analytics>
+
{|
 +
<!-- Special Notice Section-->
 +
<!--
 +
|-valign="top"
 +
|colspan="8"|<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
 +
<h2 class="frontPagePanel yellowFg">11 April 2019: Scheduled Downtime</h2>
 +
<font size=2>'''We will be taking the site down for an hour at 24:00UTC on April 11th. We are switching over to new and improved infrastructure! Sorry for any inconveniences.'''</font></div>
 +
-->
-
= WikiPathways =
+
<!-- TECHNICAL DIFFICULTIES -->
-
=== A Wiki for Biological Pathways ===
+
<!--
-
''In the “tradition” of Wikipedia and other wiki platforms, WikiPathways is intended to be an open, public space for content editing dedicated to biological pathways, facilitating the contribution and maintenance of pathway information from the scientific community.''
+
|-valign="top"
 +
|colspan="8"|<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
 +
<h2 class="frontPagePanel yellowFg">2015-Sep-01: Technical issues.</h2>
 +
<font size=2>'''We are currently experiencing some technical issues, so some pages are not accessible. We are working hard to fix those issues. Sorry for any inconveniences.'''</font></div>
 +
-->
 +
<!-- ANNOUNCEMENTS -->
 +
<!--
 +
|-valign="top" align="center"
 +
|colspan="8"|<div class="frontPagePanel redBg" style="width:95%;margin:1em;width=100%">
 +
<h2 class="frontPagePanel redFg">Share your pathway knowledge in the fight against COVID-19</h2>
 +
<font size=2>'''''ACCESS'' the rapidly growing [[Portal:COVID-19|collection of COVID-19 pathways]], ''CONTRIBUTE'' your time and domain knowledge about pathway biology as a [[Help:Authors|pathway author]], and ''USE'' these pathways in [[Help:Tools_using_WikiPathways|your research]].'''</font></div>
 +
-->
 +
<!-- Page Content -->
 +
|-valign="top"
 +
|<div class="frontPagePanel greenBg" style="width:95%;margin:1em;width=100%">
 +
<h2 class="frontPagePanel greenFg">This website is now Read-Only</h2>
 +
<font size=2>'''Visit https://wikipathways.org to see the new version of WikiPathways.''' This is the "classic" version of WikiPathways will shutdown on May 1st.<br />
 +
<b>Webservice users</b>: If you are still using the old web service, please [https://github.com/wikipathways/wikipathways-help/discussions contact us immediately] so we can help you transition.<br />
 +
<b>Curators</b>: PathVisio upload is temporarily unavailable. Please [https://github.com/wikipathways/wikipathways-help/discussions reach out] if you need to upload or update a pathway.
 +
</font></div>
-
<big>'''UNDER CONSTRUCTION'''</big>
+
<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
 +
<h2 class="frontPagePanel blueFg">Find Pathways</h2>
 +
{|style="width:100%;" border="0" valign="top" cellspacing="2" cellpadding="1" align="center"
 +
|-
 +
|rowspan="2" align="center" style="width:25%;"|
 +
|align="center" valign="top"|<big>'''Search'''</big><BR>{{#searchPathwaysBox:}}
 +
|rowspan="2" align="center" style="width:25%;"|
 +
|rowspan="2" align="center" style="width:25%;"|
 +
|rowspan="2" align="center" valign="top"|<big>'''Browse'''</big>{{#imgLink:Browse_thumb.png|200|center||special|BrowsePathwaysPage|Browse}}
 +
'''Browse by species and category'''
 +
|rowspan="2" align="center" style="width:25%;"|
 +
|-
 +
|align="left" valign="top"|'''You can search by:'''
 +
*Pathway name ''(Apoptosis)''
 +
*Gene or protein name ''(p53)''
 +
*Any page content ''(cancer)''
 +
|-
 +
|colspan="7"|
 +
|}
-
This site is not officially open for business. We are still implementing critical features and making major changes to these pages. If you are interested in what this site is about, please feel free to contact us.  We plan to have the site up and running by the end of April!
+
<h2 class="frontPagePanel blueFg">Get Pathways</h2>
 +
{|style="width:100%;" border="0" valign="top" cellspacing="2" cellpadding="1" align="center"
 +
|-
 +
|rowspan="1" align="center" style="width:25%;"|
 +
|align="center" valign="top"|<big>'''Download'''</big>{{#imgLink:Download_label.png|215|center|||Download_Pathways|Download}}
 +
'''Multiple formats and methods'''
 +
|rowspan="1" align="center" style="width:25%;"|
 +
|rowspan="1" align="center" style="width:25%;"|
 +
|rowspan="1" align="center" valign="top"|<big>'''Growth'''</big>{{#imgLink:Wp_growth_label.png|200|center|||WikiPathways:Statistics|Growth}}
 +
'''New pathways added each month'''
 +
|rowspan="1" align="center" style="width:25%;"|
 +
|-
 +
|colspan="7"|
 +
|}
-
Thomas Kelder: Thomas.Kelder[AT]BIGCAT[DOT]unimaas[DOT]nl
+
<h2 class="frontPagePanel blueFg">Edit Pathways</h2>
-
<br>
+
{|style="width:100%;" border="0" valign="top" cellspacing="2" cellpadding="1" align="center"
-
Alex Pico: apico[AT]gladstone[DOT]ucsf[DOT]edu
+
|-
 +
|rowspan="1" align="center" style="width:25%;"|
 +
|align="center" valign="top"|<big>'''Learn'''</big>{{#imgLink:AcademyPath.png|200|center||external|http://academy.wikipathways.org|WikiPathways Academy}}
 +
'''Play with the editor tools'''
 +
|rowspan="1" align="center" style="width:25%;"|
 +
|rowspan="1" align="center" style="width:25%;"|
 +
|align="center" valign="top"|<big>'''Request'''</big>{{#imgLink:RequestForm2.png|210|center||external|https://github.com/wikipathways/pathway-curation-tasks/issues|Figure Conversion}}
 +
'''Queue figures for conversion'''
 +
|rowspan="1" align="center" style="width:25%;"|
 +
|-
 +
|colspan="7"|
 +
|}
-
<big>'''UNDER CONSTRUCTION'''</big>
+
</div>
 +
| valign="top"|
 +
<div class="frontPagePanel blueBg" style="width:90%;margin:1em;width=100%;">
 +
<!--<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:CurrentHighlight | true}} -->
 +
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
 +
* '''This is the "classic" version of WikiPathways will shutdown on May 1st and is now read-only.'''
 +
* '''April 2026 Release''': [[Special:RecentPathwayChanges|71 edits]] by [[WikiPathways:Statistics#Contribution_scores|7 contributors]] and [https://www.wikipathways.org/browse/new.html 2 new pathways].
 +
* '''March 2026 Release''': [[Special:RecentPathwayChanges|45 edits]] by [[WikiPathways:Statistics#Contribution_scores|5 contributors]] and [https://www.wikipathways.org/browse/new.html no new pathways].
 +
* '''February 2026 Release''': [[Special:RecentPathwayChanges|95 edits]] by [[WikiPathways:Statistics#Contribution_scores|9 contributors]] and [https://www.wikipathways.org/browse/new.html no new pathways].
 +
* '''January 2026 Release''': [[Special:RecentPathwayChanges|134 edits]] by [[WikiPathways:Statistics#Contribution_scores|3 contributors]] and [https://www.wikipathways.org/browse/new.html no new pathways].
 +
* '''December 2025 Release''': [[Special:RecentPathwayChanges|840 edits]] by [[WikiPathways:Statistics#Contribution_scores|8 contributors]] and [https://www.wikipathways.org/browse/new.html 9 new pathways].
 +
* '''November 2025 Release''': [[Special:RecentPathwayChanges|686 edits]] by [[WikiPathways:Statistics#Contribution_scores|6 contributors]] and [https://www.wikipathways.org/browse/new.html 10 new pathways].
 +
* '''October 2025 Release''': [[Special:RecentPathwayChanges|129 edits]] by [[WikiPathways:Statistics#Contribution_scores|10 contributors]] and [https://www.wikipathways.org/browse/new.html 5 new pathways].
 +
<h2 class="frontPagePanel blueFg">Discussions</h2><recentChanges class="blueBg" style="border:none" namespace='90' limit='2'></recentChanges>&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Discussions|more...]]
 +
<h2 class="frontPagePanel blueFg">Forum</h2><rss>https://groups.google.com/group/wikipathways-discuss/feed/rss_v2_0_msgs.xml|short|max=2</rss>&nbsp;&nbsp;&nbsp;&nbsp;[http://groups.google.com/group/wikipathways-discuss Google group wikipathways-discuss]
-
==== TEST PAGES: ====
+
</div>
 +
|}
-
[[:Category:Human|Overview of all human pathways]]
+
__NOEDITSECTION__ <!-- Turn off section editing -->
-
 
+
__NOTOC__ <!-- Turn off Table of Contents  -->
-
[[:Category:Mouse|Overview of all mouse pathways]]
+
-
 
+
-
[[:Category:Rat|Overview of all rat pathways]]
+
-
 
+
-
[[:Category:Cellular Process|Cellular Process category]]
+
-
 
+
-
[[:Category:Metabolic Process|Metabolic Process category]]
+
-
 
+
-
[[:Category:Physiological Process|Physiological Process category]]
+
-
 
+
-
[[:Category:Molecular Function|Molecular Function category]]
+

Current revision

This website is now Read-Only

Visit https://wikipathways.org to see the new version of WikiPathways. This is the "classic" version of WikiPathways will shutdown on May 1st.
Webservice users: If you are still using the old web service, please contact us immediately so we can help you transition.
Curators: PathVisio upload is temporarily unavailable. Please reach out if you need to upload or update a pathway.

Find Pathways

Search

Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Get Pathways

Download

Multiple formats and methods

Growth

New pathways added each month

Edit Pathways

Learn

Play with the editor tools

Request

Queue figures for conversion


Updates

Discussions

No recent changes    more...

Forum

        Google group wikipathways-discuss


    Personal tools