PathwayWidget - Revision history

Ariutta: /* Examples */ Add Toolforge option showing mapped identifiers

Ariutta — Mon, 21 Sep 2020 22:16:03 GMT

Examples: Add Toolforge option showing mapped identifiers

←Older revision		Revision as of 22:16, 21 September 2020
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	Alternate Option: Pathway Viewer on Toolforge (in beta)		Alternate Option: Pathway Viewer on Toolforge (in beta)
	<pre><nowiki><iframe src ="https://pathway-viewer.toolforge.org/?id=WP528&lightgreen=Entrez_Gene_10400&pink=CAS_62-49-7&lightblue=Entrez_Gene_1119" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>		<pre><nowiki><iframe src ="https://pathway-viewer.toolforge.org/?id=WP528&lightgreen=Entrez_Gene_10400&pink=CAS_62-49-7&lightblue=Entrez_Gene_1119" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>
		+
		+	==== Mapped Identifiers ====
		+	Pathway WP528 uses Entrez Gene (NCBIGene) for identifiers, but with the pathway viewer on Toolforge (in beta), you can highlight using Ensembl identifiers:
		+	<pre><nowiki><iframe src ="https://pathway-viewer.toolforge.org/?id=WP528&yellow=Ensembl_ENSG00000110721,Ensembl_ENSG00000161217" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>
		+
		+	<html>
		+	<iframe src ="https://pathway-viewer.toolforge.org/?id=WP528&yellow=Ensembl_ENSG00000110721,Ensembl_ENSG00000161217" width="600px" height="300px" style="overflow:hidden;"></iframe>
		+	</html>
		+
		+	Supported identifiers include Entrez Gene (NCBIGene), Ensembl, HGNC, Wikidata, ChEBI and HMDB.

Ariutta: /* Examples */

Ariutta — Mon, 21 Sep 2020 22:01:10 GMT

Examples

←Older revision		Revision as of 22:01, 21 September 2020
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	</html>		</html>

-	Alternate ~~option in beta~~: Toolforge	+	Alternate Option: Pathway Viewer on Toolforge (in beta)
	<pre><nowiki><iframe src ="https://pathway-viewer.toolforge.org/?id=WP554" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>		<pre><nowiki><iframe src ="https://pathway-viewer.toolforge.org/?id=WP554" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>

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	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>		<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>
	</html>		</html>
		+
		+	Alternate Option: Pathway Viewer on Toolforge (in beta)
		+	<pre><nowiki><iframe src ="https://pathway-viewer.toolforge.org/?id=WP528&lightgreen=PEMT" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>

	==== Multiple Labels and Colors ====		==== Multiple Labels and Colors ====
-	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=~~Choline~~&label[]=~~PEMT~~&label[]=CHKA&colors=green,red,blue" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>	+	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=PEMT&label[]=Choline&label[]=CHKA&colors=green,red,blue" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>

	<html>		<html>
-	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=~~Choline~~&label[]=~~PEMT~~&label[]=CHKA&colors=green,red,blue" width="800px" height="400px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=PEMT&label[]=Choline&label[]=CHKA&colors=green,red,blue" width="800px" height="400px" style="overflow:hidden;"></iframe>
	</html>		</html>
		+
		+	Alternate Option: Pathway Viewer on Toolforge (in beta)
		+	<pre><nowiki><iframe src ="https://pathway-viewer.toolforge.org/?id=WP528&lightgreen=PEMT&pink=Choline&lightblue=CHKA" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>

	==== Xref and Color ====		==== Xref and Color ====
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	<html>		<html>
-	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528~~&label=PEMT~~&xref=10400,Entrez Gene&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref=10400,Entrez Gene&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>
	</html>		</html>
		+
		+	Alternate Option: Pathway Viewer on Toolforge (in beta)
		+	<pre><nowiki><iframe src ="https://pathway-viewer.toolforge.org/?id=WP528&lightgreen=Entrez_Gene_10400" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>

	==== Multiple Xrefs and Colors ====		==== Multiple Xrefs and Colors ====
-	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=~~62-49-7~~,~~CAS~~&xref[]=~~10400~~,~~Entrez Gene~~&xref[]=1119,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>	+	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=10400,Entrez Gene&xref[]=62-49-7,CAS&xref[]=1119,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>

	<html>		<html>
-	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=~~62-49-7~~,~~CAS~~&xref[]=~~10400~~,~~Entrez Gene~~&xref[]=1119,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=10400,Entrez Gene&xref[]=62-49-7,CAS&xref[]=1119,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe>
	</html>		</html>
		+
		+	Alternate Option: Pathway Viewer on Toolforge (in beta)
		+	<pre><nowiki><iframe src ="https://pathway-viewer.toolforge.org/?id=WP528&lightgreen=Entrez_Gene_10400&pink=CAS_62-49-7&lightblue=Entrez_Gene_1119" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>

Ariutta: /* Examples */ Add Toolforge option for first example

Ariutta — Mon, 21 Sep 2020 21:43:33 GMT

Examples: Add Toolforge option for first example

←Older revision		Revision as of 21:43, 21 September 2020
Line 13:		Line 13:
	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP87" width="600px" height="300px" style="overflow:hidden;"></iframe>		<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP87" width="600px" height="300px" style="overflow:hidden;"></iframe>
	</html>		</html>
		+
		+	Alternate option in beta: Toolforge
		+	<pre><nowiki><iframe src ="https://pathway-viewer.toolforge.org/?id=WP554" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>

	=== Specific version of the pathway ===		=== Specific version of the pathway ===

MaintBot: /* Multiple Xrefs and Color */

MaintBot — Tue, 02 Jan 2018 20:21:33 GMT

Multiple Xrefs and Color

←Older revision		Revision as of 20:21, 2 January 2018
Line 58:		Line 58:
	</html>		</html>

-	==== Multiple Xrefs and ~~Color~~ ====	+	==== Multiple Xrefs and Colors ====
	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=62-49-7,CAS&xref[]=10400,Entrez Gene&xref[]=1119,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>		<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=62-49-7,CAS&xref[]=10400,Entrez Gene&xref[]=1119,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>

AlexanderPico: /* Multiple Xrefs and Color */

AlexanderPico — Sat, 16 Dec 2017 01:19:10 GMT

Multiple Xrefs and Color

←Older revision		Revision as of 01:19, 16 December 2017
Line 59:		Line 59:

	==== Multiple Xrefs and Color ====		==== Multiple Xrefs and Color ====
-	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=62-49-7,CAS&xref[]=10400,Entrez Gene&xref[]=~~1110~~,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>	+	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=62-49-7,CAS&xref[]=10400,Entrez Gene&xref[]=1119,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>

	<html>		<html>
-	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=62-49-7,CAS&xref[]=10400,Entrez Gene&xref[]=~~1110~~,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=62-49-7,CAS&xref[]=10400,Entrez Gene&xref[]=1119,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe>
	</html>		</html>

AlexanderPico: /* Multiple Labels and Colors */

AlexanderPico — Sat, 16 Dec 2017 01:17:59 GMT

Multiple Labels and Colors

←Older revision		Revision as of 01:17, 16 December 2017
Line 45:		Line 45:

	==== Multiple Labels and Colors ====		==== Multiple Labels and Colors ====
-	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,~~blue~~,blue" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>	+	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,blue" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>

	<html>		<html>
-	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,~~bluee~~" width="800px" height="400px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,blue" width="800px" height="400px" style="overflow:hidden;"></iframe>
	</html>		</html>

AlexanderPico: /* Multiple Labels and Colors */

AlexanderPico — Sat, 16 Dec 2017 01:17:42 GMT

Multiple Labels and Colors

←Older revision		Revision as of 01:17, 16 December 2017
Line 45:		Line 45:

	==== Multiple Labels and Colors ====		==== Multiple Labels and Colors ====
-	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,~~red~~,blue" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>	+	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,blue,blue" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>

	<html>		<html>

AlexanderPico: updating examples

AlexanderPico — Sat, 16 Dec 2017 01:16:44 GMT

updating examples

←Older revision		Revision as of 01:16, 16 December 2017
Line 41:		Line 41:

	<html>		<html>
-	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT~~&xref=62-49-7,CAS~~&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>
	</html>		</html>

Line 51:		Line 51:
	</html>		</html>

-	==== ~~Label,~~ Xref and Color ====	+	==== Xref and Color ====
-	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528~~&label=PEMT~~&xref=~~62-49-7~~,~~CAS~~&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>	+	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref=10400,Entrez Gene&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>

	<html>		<html>
-	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&xref=~~62-49-7~~,~~CAS~~&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&xref=10400,Entrez Gene&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>
	</html>		</html>

-	==== Multiple ~~Labels~~ and ~~Colors~~ ====	+	==== Multiple Xrefs and Color ====
-	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&~~label~~[]=~~Choline~~&~~label~~[]=~~PEMT~~&~~label~~[]=~~CHKA~~&colors=green,red,blue~~" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>~~	+	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=62-49-7,CAS&xref[]=10400,Entrez Gene&xref[]=1110,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>
-		+
-	~~<html>~~	+
-	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,bluee" width="800px" height="400px" style="overflow:hidden;"></iframe>	+
-	~~</html>~~	+
-		+
-	~~==== Multiple Xrefs and Single Color ====~~	+
-	~~<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP4&xref[]=ENSG00000121057,Ensembl&xref[]=HMDB00464,HMDB&colors=purple~~" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>	+

	<html>		<html>
-	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=~~WP4~~&xref[]=~~ENSG00000121057~~,~~Ensembl~~&xref[]=~~HMDB00464~~,~~HMDB~~&colors=~~purple~~" width="600px" height="300px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&xref[]=62-49-7,CAS&xref[]=10400,Entrez Gene&xref[]=1110,Entrez Gene&colors=green,red,blue" width="600px" height="300px" style="overflow:hidden;"></iframe>
	</html>		</html>

MaintBot: adding https

MaintBot — Fri, 15 Dec 2017 23:50:53 GMT

adding https

←Older revision		Revision as of 23:50, 15 December 2017
Line 52:		Line 52:

	==== Label, Xref and Color ====		==== Label, Xref and Color ====
-	<pre><nowiki><iframe src ="~~http~~://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&xref=62-49-7,CAS&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>	+	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&xref=62-49-7,CAS&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>

	<html>		<html>
-	<iframe src ="~~http~~://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&xref=62-49-7,CAS&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&xref=62-49-7,CAS&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>
	</html>		</html>

	==== Multiple Labels and Colors ====		==== Multiple Labels and Colors ====
-	<pre><nowiki><iframe src ="~~http~~://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,blue" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>	+	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,blue" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>

	<html>		<html>
-	<iframe src ="~~http~~://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,bluee" width="800px" height="400px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,bluee" width="800px" height="400px" style="overflow:hidden;"></iframe>
	</html>		</html>

	==== Multiple Xrefs and Single Color ====		==== Multiple Xrefs and Single Color ====
-	<pre><nowiki><iframe src ="~~http~~://www.wikipathways.org/wpi/PathwayWidget.php?id=WP4&xref[]=ENSG00000121057,Ensembl&xref[]=HMDB00464,HMDB&colors=purple" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>	+	<pre><nowiki><iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP4&xref[]=ENSG00000121057,Ensembl&xref[]=HMDB00464,HMDB&colors=purple" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>

	<html>		<html>
-	<iframe src ="~~http~~://www.wikipathways.org/wpi/PathwayWidget.php?id=WP4&xref[]=ENSG00000121057,Ensembl&xref[]=HMDB00464,HMDB&colors=purple" width="600px" height="300px" style="overflow:hidden;"></iframe>	+	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP4&xref[]=ENSG00000121057,Ensembl&xref[]=HMDB00464,HMDB&colors=purple" width="600px" height="300px" style="overflow:hidden;"></iframe>
	</html>		</html>

MaintBot: adding old ones back

MaintBot — Fri, 15 Dec 2017 23:50:04 GMT

adding old ones back

←Older revision		Revision as of 23:50, 15 December 2017
Line 49:		Line 49:
	<html>		<html>
	<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,bluee" width="800px" height="400px" style="overflow:hidden;"></iframe>		<iframe src ="https://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,bluee" width="800px" height="400px" style="overflow:hidden;"></iframe>
		+	</html>
		+
		+	==== Label, Xref and Color ====
		+	<pre><nowiki><iframe src ="http://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&xref=62-49-7,CAS&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>
		+
		+	<html>
		+	<iframe src ="http://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label=PEMT&xref=62-49-7,CAS&colors=green" width="800px" height="400px" style="overflow:hidden;"></iframe>
		+	</html>
		+
		+	==== Multiple Labels and Colors ====
		+	<pre><nowiki><iframe src ="http://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,blue" width="800px" height="400px" style="overflow:hidden;"></iframe></nowiki></pre>
		+
		+	<html>
		+	<iframe src ="http://www.wikipathways.org/wpi/PathwayWidget.php?id=WP528&label[]=Choline&label[]=PEMT&label[]=CHKA&colors=green,red,bluee" width="800px" height="400px" style="overflow:hidden;"></iframe>
		+	</html>
		+
		+	==== Multiple Xrefs and Single Color ====
		+	<pre><nowiki><iframe src ="http://www.wikipathways.org/wpi/PathwayWidget.php?id=WP4&xref[]=ENSG00000121057,Ensembl&xref[]=HMDB00464,HMDB&colors=purple" width="600px" height="300px" style="overflow:hidden;"></iframe></nowiki></pre>
		+
		+	<html>
		+	<iframe src ="http://www.wikipathways.org/wpi/PathwayWidget.php?id=WP4&xref[]=ENSG00000121057,Ensembl&xref[]=HMDB00464,HMDB&colors=purple" width="600px" height="300px" style="overflow:hidden;"></iframe>
	</html>		</html>