How to cite WikiPathways - Revision history

MaintBot at 08:18, 20 April 2024

2024-04-20T08:18:28Z

←Older revision		Revision as of 08:18, 20 April 2024
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	'''''When referring to the latest website or content, please cite the most recent update paper:'''''		'''''When referring to the latest website or content, please cite the most recent update paper:'''''
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		+	* Agrawal A, Balcı H, Hanspers K, Coort SL, Martens M, Slenter DN, Ehrhart F, Digles D, Waagmeester A, Wassink I, Abbassi-Daloii T, Lopes EN, Iyer A, Millán Acosta J, Willighagen LG, Nishida K, Riutta A, Basaric H, Evelo CT, Willighagen EL, Kutmon M, Pico AR. (2024) '''WikiPathways 2024: next generation pathway database'''. NAR 52(D1): [https://doi.org/10.1093/nar/gkad960 (link to article)]

	[[Image:Nar2024.png\|right\|x350px]]		[[Image:Nar2024.png\|right\|x350px]]

MaintBot at 09:17, 24 February 2024

2024-02-24T09:17:30Z

←Older revision		Revision as of 09:17, 24 February 2024
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	When citing the WikiPathways project, we recommend citing either our latest NAR Database article or the original 2008 PLoS Biology article:		When citing the WikiPathways project, we recommend citing either our latest NAR Database article or the original 2008 PLoS Biology article:

-	* Agrawal A, Balcı H, Hanspers K, Coort SL, Martens M, Slenter DN, Ehrhart F, Digles D, Waagmeester A, Wassink I, Abbassi-Daloii T, Lopes EN, Iyer A, Millán Acosta J, Willighagen LG, Nishida K, Riutta A, Basaric H, Evelo CT, Willighagen EL, Kutmon M, Pico AR. (2024) '''WikiPathways 2024: next generation pathway database'''. ~~BAR~~ 52(D1): [https://doi.org/10.1093/nar/gkad960 (link to article)]	+	* Agrawal A, Balcı H, Hanspers K, Coort SL, Martens M, Slenter DN, Ehrhart F, Digles D, Waagmeester A, Wassink I, Abbassi-Daloii T, Lopes EN, Iyer A, Millán Acosta J, Willighagen LG, Nishida K, Riutta A, Basaric H, Evelo CT, Willighagen EL, Kutmon M, Pico AR. (2024) '''WikiPathways 2024: next generation pathway database'''. NAR 52(D1): [https://doi.org/10.1093/nar/gkad960 (link to article)]
	* Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C. (2008) '''WikiPathways: Pathway Editing for the People'''. PLoS Biol 6(7): [http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0060184 (link to article)]		* Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C. (2008) '''WikiPathways: Pathway Editing for the People'''. PLoS Biol 6(7): [http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0060184 (link to article)]

MaintBot at 09:17, 24 February 2024

2024-02-24T09:17:12Z

←Older revision		Revision as of 09:17, 24 February 2024
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	'''''When referring to the latest website or content, please cite the most recent update paper:'''''		'''''When referring to the latest website or content, please cite the most recent update paper:'''''

-	[[Image:~~Nar2020~~.png\|right\|x350px]]	+	[[Image:Nar2024.png\|right\|x350px]]

	When citing the WikiPathways project, we recommend citing either our latest NAR Database article or the original 2008 PLoS Biology article:		When citing the WikiPathways project, we recommend citing either our latest NAR Database article or the original 2008 PLoS Biology article:

MaintBot: Added the latest paper and link to the new page for more topical papers

2024-02-24T09:15:34Z

Added the latest paper and link to the new page for more topical papers

←Older revision		Revision as of 09:15, 24 February 2024
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	[[Image:Nar2020.png\|right\|x350px]]		[[Image:Nar2020.png\|right\|x350px]]

-	* Martens M, Ammar A, Riutta A, Waagmeester A, Slenter DN, Hanspers K, Miller RA, Digles D, Lopes EN, Ehrhart F, Dupuis LJ, Winckers LA, Coort SL, Willighagen EL, Evelo CT, Pico AR, Kutmon M. ''' WikiPathways: connecting communities ''' ''Nucleic Acids Research'', (2021), Volume 49, Issue D1, 8 January 2021, Pages D613–D621, [https://doi.org/10.1093/nar/gkaa1024 doi.org/10.1093/nar/gkaa1024] [https://pubmed.ncbi.nlm.nih.gov/33211851/ PMID:33211851].	+	When citing the WikiPathways project, we recommend citing either our latest NAR Database article or the original 2008 PLoS Biology article:
-		+
-	~~----~~	+
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-	~~'''''~~When ~~referring to specific issues described in previous update papers, please cite~~ the ~~respective paper:'''''~~	+
-		+
-	* Slenter DN, Kutmon M, Hanspers K, Riutta A, Windsor J, Nunes N, Mélius J, Cirillo E, Coort SL, Digles D, Ehrhart F, Giesbertz P, Kalafati M, Martens M, Miller R, Nishida K, Rieswijk L, Waagmeester A, Eijssen LMT, Evelo CT, Pico AR, Willighagen EL. '''WikiPathways~~: a multifaceted pathway database bridging metabolomics to other omics research''' ''Nucleic Acids Research''~~, ~~(2018) [https://doi.org/10.1093/nar/gkx1064 doi.org/10.1093/nar/gkx1064] [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753270/ PMC5753270]~~	+
-		+
-	* Kutmon M, Riutta A, Nunes N, Hanspers K, Willighagen EL, Bohler A, Mélius J, Waagmeester A, Sinha SR, Miller R, Coort SL, Cirillo E, Smeets B, Evelo CT, Pico AR. '''WikiPathways: capturing the full diversity of pathway knowledge''' ''Nucl. Acids Res.'', 44, D488-D494 (2016) [http://dx.doi.org/10.1093/nar/gkv1024 doi:10.1093/nar/gkv1024] [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702772/ PMC4702772]	+
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-	* Kelder T, van Iersel MP, Hanspers K, Kutmon M, Conklin BR, Evelo C, Pico AR. '''WikiPathways: building research communities on biological pathways.''' ''Nucleic Acids Res.'' 2012 Jan;40(Database ~~issue):D1301-7 [http://nar.oxfordjournals.org/content/early/2011/11/16/nar.gkr1074.abstract (link to~~ article)]	+
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-	~~'''''When referring to the web services, please cite:'''''~~	+
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-	* Kelder T, Pico AR, Hanspers K, van Iersel MP, Evelo C, Conklin BR. (2009) '''Mining Biological Pathways Using WikiPathways Web Services'''. PLoS ONE 4(7): [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2714472/ (link to article)]	+
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-	~~----~~	+
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-	~~'''''When referring to~~ or ~~using~~ the ~~semantic web (RDF) version, please cite:'''''~~	+
-		+
-	* Waagmeester A, Kutmon M. Riutta A, Miller R, Willighagen E, Evelo CT, Pico AR. (2016) '''Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources'''. PLoS ~~Comput Bio 12(6): [https://doi.org/10.1371/journal.pcbi.1004989 (link to~~ article)]	+
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-	~~'''''When referring to the origins of WikiPathways, please cite~~:~~'''''~~	+

		+	* Agrawal A, Balcı H, Hanspers K, Coort SL, Martens M, Slenter DN, Ehrhart F, Digles D, Waagmeester A, Wassink I, Abbassi-Daloii T, Lopes EN, Iyer A, Millán Acosta J, Willighagen LG, Nishida K, Riutta A, Basaric H, Evelo CT, Willighagen EL, Kutmon M, Pico AR. (2024) '''WikiPathways 2024: next generation pathway database'''. BAR 52(D1): [https://doi.org/10.1093/nar/gkad960 (link to article)]
	* Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C. (2008) '''WikiPathways: Pathway Editing for the People'''. PLoS Biol 6(7): [http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0060184 (link to article)]		* Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C. (2008) '''WikiPathways: Pathway Editing for the People'''. PLoS Biol 6(7): [http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0060184 (link to article)]

-		+	When you want to cite specific functionality, like biological interactions, metabolomics, the WikiPathways Academy, our nanopublication, the Web Service, RDF, etc, please see [https://www.wikipathways.org/cite.html this page for more citetable research output].
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-	~~'''''~~When ~~using or referencing WikiPathways in general, please~~ cite ~~the main page:'''''~~	+
-	* [https://www.wikipathways.org wikipathways.org]	+
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-	~~'''''When using~~, ~~referencing or redistributing particular pathways~~, ~~please cite the specific pathway~~, ~~for example:'''''~~	+
-	~~[https://www.wikipathways.org/instance/WP254 www.wikipathways.org/instance/WP254]~~	+
-		+
-	* When citing the live version of a pathway, attribution to individual contributors is not necessary. WikiPathways will track and display contributions from individual authors and curators to each pathway on each pathway page. So as long as hyperlinks are provided to WikiPathways, ~~the evolving list of contributors will be indirectly referenced.~~	+
-	* However, ~~if you are referencing a specific version of a pathway (even including~~ the ~~current version)~~, then it is important to include a URL of the form: [https://www.wikipathways.org/instance/WP254_r93003 wikipathways.org/instance/WP254_r93003]. This approach is useful if you want to maintain a link to a snapshot of the pathway and not have future changes obscure your original points. Use the "r" argument in the URL to refer to particular revision ID numbers, ~~which you can find in the History section of each pathway page.~~	+
-	* Also, ~~when referencing a specific version, it is appropriate to list the individual contributors, since future contributors are not an issue. Thus, the reference might look like this:~~	+
-	~~Salomonis N, Pico A, Hanspers K: SIDS Susceptibility Pathways (Homo sapiens).~~ [https://www.wikipathways.org/~~instance/WP706_r92921 wikipathways.org/instance/WP706_r92921]~~	+
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-	~~----~~	+
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-	~~'''''When referring to the use of Adverse Outcome Pathways (AOPs) and WikiPathways, please~~ cite ~~the respective paper:'''''~~	+
-		+
-	* Martens M, Verbruggen T, Nymark P, Grafström R, Burgoon LD, Aladjov H, Torres Andón T, Evelo CT, Willighagen EL. ~~'''Introducing WikiPathways as a data-source to support Adverse Outcome Pathways~~ for ~~regulatory risk assessment of chemicals and nanomaterials~~.~~''' ''Front. Genet. '', (2018) [https://www.frontiersin.org/articles/10.3389/fgene.2018.00661/abstract doi:10.3389/fgene.2018.00661]~~	+

	== Trademark ==		== Trademark ==

MaintBot at 11:58, 1 January 2023

2023-01-01T11:58:29Z

←Older revision		Revision as of 11:58, 1 January 2023
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	'''''When referring to the web services, please cite:'''''		'''''When referring to the web services, please cite:'''''

-	* Kelder T, Pico AR, Hanspers K, van Iersel MP, Evelo C, Conklin BR. (2009) Mining Biological Pathways Using WikiPathways Web Services. PLoS ONE 4(7): [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2714472/ (link to article)]	+	* Kelder T, Pico AR, Hanspers K, van Iersel MP, Evelo C, Conklin BR. (2009) '''Mining Biological Pathways Using WikiPathways Web Services'''. PLoS ONE 4(7): [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2714472/ (link to article)]


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	'''''When referring to or using the semantic web (RDF) version, please cite:'''''		'''''When referring to or using the semantic web (RDF) version, please cite:'''''

-	* Waagmeester A, Kutmon M. Riutta A, Miller R, Willighagen E, Evelo CT, Pico AR. (2016) Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources. PLoS Comput Bio 12(6): [https://doi.org/10.1371/journal.pcbi.1004989 (link to article)]	+	* Waagmeester A, Kutmon M. Riutta A, Miller R, Willighagen E, Evelo CT, Pico AR. (2016) '''Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources'''. PLoS Comput Bio 12(6): [https://doi.org/10.1371/journal.pcbi.1004989 (link to article)]


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	'''''When referring to the origins of WikiPathways, please cite:'''''		'''''When referring to the origins of WikiPathways, please cite:'''''

-	* Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C. (2008) WikiPathways: Pathway Editing for the People. PLoS Biol 6(7): [http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0060184 (link to article)]	+	* Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C. (2008) '''WikiPathways: Pathway Editing for the People'''. PLoS Biol 6(7): [http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0060184 (link to article)]

MaintBot at 11:55, 1 January 2023

2023-01-01T11:55:48Z

←Older revision		Revision as of 11:55, 1 January 2023
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	* Kelder T, Pico AR, Hanspers K, van Iersel MP, Evelo C, Conklin BR. (2009) Mining Biological Pathways Using WikiPathways Web Services. PLoS ONE 4(7): [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2714472/ (link to article)]		* Kelder T, Pico AR, Hanspers K, van Iersel MP, Evelo C, Conklin BR. (2009) Mining Biological Pathways Using WikiPathways Web Services. PLoS ONE 4(7): [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2714472/ (link to article)]
		+
		+
		+	----
		+
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		+	'''''When referring to or using the semantic web (RDF) version, please cite:'''''
		+
		+	* Waagmeester A, Kutmon M. Riutta A, Miller R, Willighagen E, Evelo CT, Pico AR. (2016) Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources. PLoS Comput Bio 12(6): [https://doi.org/10.1371/journal.pcbi.1004989 (link to article)]

Khanspers: Protected "How to cite WikiPathways" [edit=sysop:move=sysop]

2021-08-30T19:10:24Z

Protected "How to cite WikiPathways" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:10, 30 August 2021

DeSl at 09:13, 4 January 2021

2021-01-04T09:13:13Z

←Older revision		Revision as of 09:13, 4 January 2021
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	[[Image:Nar2020.png\|right\|x350px]]		[[Image:Nar2020.png\|right\|x350px]]

-	* Martens M, Ammar A, Riutta A, Waagmeester A, Slenter DN, Hanspers K, Miller RA, Digles D, Lopes EN, Ehrhart F, Dupuis LJ, Winckers LA, Coort SL, Willighagen EL, Evelo CT, Pico AR, Kutmon M. ''' WikiPathways: connecting communities ''' ''Nucleic Acids Research'', (2021) [https://doi.org/10.1093/nar/gkaa1024 doi.org/10.1093/nar/gkaa1024] [https://pubmed.ncbi.nlm.nih.gov/33211851/ PMID:33211851].	+	* Martens M, Ammar A, Riutta A, Waagmeester A, Slenter DN, Hanspers K, Miller RA, Digles D, Lopes EN, Ehrhart F, Dupuis LJ, Winckers LA, Coort SL, Willighagen EL, Evelo CT, Pico AR, Kutmon M. ''' WikiPathways: connecting communities ''' ''Nucleic Acids Research'', (2021), Volume 49, Issue D1, 8 January 2021, Pages D613–D621, [https://doi.org/10.1093/nar/gkaa1024 doi.org/10.1093/nar/gkaa1024] [https://pubmed.ncbi.nlm.nih.gov/33211851/ PMID:33211851].

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DeSl at 09:12, 4 January 2021

2021-01-04T09:12:21Z

←Older revision		Revision as of 09:12, 4 January 2021
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	[[Image:Nar2020.png\|right\|x350px]]		[[Image:Nar2020.png\|right\|x350px]]

-	* Martens M, Ammar A, Riutta A, Waagmeester A, Slenter DN, Hanspers K, Miller RA, Digles D, Lopes EN, Ehrhart F, Dupuis LJ, Winckers LA, Coort SL, Willighagen EL, Evelo CT, Pico AR, Kutmon M. ''' WikiPathways: connecting communities ''' ''Nucleic Acids Research'', (~~2020~~) https://doi.org/10.1093/nar/gkaa1024 doi.org/10.1093/nar/gkaa1024] .	+	* Martens M, Ammar A, Riutta A, Waagmeester A, Slenter DN, Hanspers K, Miller RA, Digles D, Lopes EN, Ehrhart F, Dupuis LJ, Winckers LA, Coort SL, Willighagen EL, Evelo CT, Pico AR, Kutmon M. ''' WikiPathways: connecting communities ''' ''Nucleic Acids Research'', (2021) [https://doi.org/10.1093/nar/gkaa1024 doi.org/10.1093/nar/gkaa1024] [https://pubmed.ncbi.nlm.nih.gov/33211851/ PMID:33211851].

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DeSl at 12:20, 26 November 2020

2020-11-26T12:20:46Z

←Older revision		Revision as of 12:20, 26 November 2020
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	'''''When referring to the latest website or content, please cite the most recent update paper:'''''		'''''When referring to the latest website or content, please cite the most recent update paper:'''''

-	[[Image:~~SlenterNARFirstPage~~.png\|right\|x350px]]	+	[[Image:Nar2020.png\|right\|x350px]]

	* Martens M, Ammar A, Riutta A, Waagmeester A, Slenter DN, Hanspers K, Miller RA, Digles D, Lopes EN, Ehrhart F, Dupuis LJ, Winckers LA, Coort SL, Willighagen EL, Evelo CT, Pico AR, Kutmon M. ''' WikiPathways: connecting communities ''' ''Nucleic Acids Research'', (2020) https://doi.org/10.1093/nar/gkaa1024 doi.org/10.1093/nar/gkaa1024] .		* Martens M, Ammar A, Riutta A, Waagmeester A, Slenter DN, Hanspers K, Miller RA, Digles D, Lopes EN, Ehrhart F, Dupuis LJ, Winckers LA, Coort SL, Willighagen EL, Evelo CT, Pico AR, Kutmon M. ''' WikiPathways: connecting communities ''' ''Nucleic Acids Research'', (2020) https://doi.org/10.1093/nar/gkaa1024 doi.org/10.1093/nar/gkaa1024] .