AlexanderPico: New page: NOEDITSECTION {| align="right" | TOC |} Pathways available for download have been explicitly marked with the '''Curated collection''' curati...

2016-10-19T20:34:13Z

New page: __NOEDITSECTION__  {| align="right" | __TOC__ |} Pathways available for download have been explicitly marked with the '''Curated collection''' curati...

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Pathways available for download have been explicitly marked with the '''Curated collection''' curation tag. This includes pathways that have been carefully curated and typically excludes draft or test pathways not intended for distribution. '''This is the recommended set for download'''.

A larger set of pathway which includes non-curated content is available [[:Download_All_Pathways | here]].

== GPML ==

The pathways from the Human collection of Reactome are available through the Reactome portal at WikiPathways. Click [http://www.wikipathways.org//wpi/batchDownload.php?species=Homo%20sapiens&fileType=gpml&tag=Curation:Reactome_Approved here] to download them.

Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in [http://pathvisio.org PathVisio]. You can also use GPML files for analysis in both PathVisio and [http://cytoscape.org Cytoscape] using the [http://apps.cytoscape.org/apps/wikipathways WikiPathways app].

{|class="prettytable"
|- valign="top"
|<batchDownload filetype="gpml" tag="Curation:AnalysisCollection"></batchDownload>
|}

== BioPAX ==
Click on one of the links below to download all pathways in [http://www.biopax.org BioPAX] level 3 format.

{|class="prettytable"
|- valign="top"
|<batchDownload filetype="owl" tag="Curation:AnalysisCollection"></batchDownload>
|}

== Eu.Gene ==
Click on one of the links below to download all pathways in the [http://www.duccioknights.org/?page_id=169 Eu.Gene] format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways ([http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=pubmed&list_uids=17599938&dopt=AbstractPlus read more]).

{|class="prettytable"
|- valign="top"
|<batchDownload filetype="pwf" tag="Curation:AnalysisCollection"></batchDownload>
|}

== Plain text ==
Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first
column, and the database system in the second column.

{|class="prettytable"
|- valign="top"
|<batchDownload filetype="txt" tag="Curation:AnalysisCollection"></batchDownload>
|}

== PDF ==
Click on one of the links below to download all pathways in Portable Document Format (PDF).

{|class="prettytable"
|- valign="top"
|<batchDownload filetype="pdf" tag="Curation:AnalysisCollection"></batchDownload>
|}

== SVG ==
Click on one of the links below to download all pathways in [http://www.w3.org/Graphics/SVG/ SVG] format. The [http://www.w3.org/Graphics/SVG/ SVG] files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using [http://www.inkscape.org Inkscape].

{|class="prettytable"
|- valign="top"
|<batchDownload filetype="svg" tag="Curation:AnalysisCollection"></batchDownload>
|}

== PNG ==
Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.

{|class="prettytable"
|- valign="top"
|<batchDownload filetype="png" tag="Curation:AnalysisCollection"></batchDownload>
|}

== GMT Gene Sets ==

You can download the species-specific WikiPathways gene set collections [http://www.pathvisio.org/data/bots/gmt/current/ here].
This file gets updated every day.

Download Pathways old - Revision history

AlexanderPico: New page: __NOEDITSECTION__ {| align="right" | __TOC__ |} Pathways available for download have been explicitly marked with the '''Curated collection''' curati...

AlexanderPico: New page: NOEDITSECTION {| align="right" | TOC |} Pathways available for download have been explicitly marked with the '''Curated collection''' curati...