Development - Revision history

Khanspers: Protected "Development" [edit=sysop:move=sysop]

2021-08-30T19:18:14Z

Protected "Development" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:18, 30 August 2021

AlexanderPico: add some jenkins links

2018-04-01T18:30:54Z

add some jenkins links

←Older revision		Revision as of 18:30, 1 April 2018
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	== SPARQL queries ==		== SPARQL queries ==
	See the [[:Help:WikiPathways Sparql queries\|WikiPathways SPARQL queries]] for example queries to interact with WikiPathways SPARQL query		See the [[:Help:WikiPathways Sparql queries\|WikiPathways SPARQL queries]] for example queries to interact with WikiPathways SPARQL query
		+
		+	== Project Monitoring ==
		+	* [https://jenkins.bigcat.unimaas.nl/job/Website%20Monitoring/ Website tests]
		+	* [https://jenkins.bigcat.unimaas.nl/job/PathVisio/ PathVisio]
		+	* [https://jenkins.bigcat.unimaas.nl/job/rwikipathways/ rWikiPathways]

	== WikiPathways Team ==		== WikiPathways Team ==

AlexanderPico: /* How to Contribute */ fixed urls

2018-03-31T18:27:39Z

How to Contribute: fixed urls

←Older revision		Revision as of 18:27, 31 March 2018
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	=== How to Contribute ===		=== How to Contribute ===
-	* For all potential [https://github.com/wikipathways/wikipathways.org/CONTRIBUTING.md Contributors]	+	* For all potential [https://github.com/wikipathways/wikipathways.org/blob/master/CONTRIBUTING.md Contributors]
-	* The project [https://github.com/wikipathways/wikipathways.org/README.md Readme]	+	* The project [https://github.com/wikipathways/wikipathways.org/blob/master/README.md Readme]
-	* The project [https://github.com/wikipathways/wikipathways.org/ROADMAP.md Roadmap]	+	* The project [https://github.com/wikipathways/wikipathways.org/blob/master/ROADMAP.md Roadmap]
-	* Our community [https://github.com/wikipathways/wikipathways.org/CODEOFCONDUCT.md Code of Conduct]	+	* Our community [https://github.com/wikipathways/wikipathways.org/blob/master/CODEOFCONDUCT.md Code of Conduct]
-	* Our organization [https://github.com/wikipathways/wikipathways.org/SOP.md SOP]	+	* Our organization [https://github.com/wikipathways/wikipathways.org/blob/master/SOP.md SOP]
	* Developer information for the Java-based Pathvisio application: http://developers.pathvisio.org/		* Developer information for the Java-based Pathvisio application: http://developers.pathvisio.org/
	* [https://www.google.com/calendar/ical/e3v5j4msn3f0gurkkfobd3gau0%40group.calendar.google.com/public/basic.ics Meeting schedule (Google Calendar)]		* [https://www.google.com/calendar/ical/e3v5j4msn3f0gurkkfobd3gau0%40group.calendar.google.com/public/basic.ics Meeting schedule (Google Calendar)]

AlexanderPico: updated to include new dev docs

2018-03-31T18:24:28Z

updated to include new dev docs

←Older revision		Revision as of 18:24, 31 March 2018
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-	~~== WikiPathways Team ==~~
-	~~Find information about the organizational structure and the '''[[WikiPathways:Team\|WikiPathways team]]'''.~~
-
	== WikiPathways development ==		== WikiPathways development ==
-	~~Developer information~~, ~~a roadmap and bugs can be found~~ at:	+	As an open source project, we welcome new developers at all levels. Please visit our repo at
-	* http://developers.pathvisio.org/	+	https://github.com/wikipathways/wikipathways.org. Built upon MediaWiki,
		+	the site includes numerous custom extensions, javascript, skins and hacks.
		+
		+	=== How to Contribute ===
		+	* For all potential [https://github.com/wikipathways/wikipathways.org/CONTRIBUTING.md Contributors]
		+	* The project [https://github.com/wikipathways/wikipathways.org/README.md Readme]
		+	* The project [https://github.com/wikipathways/wikipathways.org/ROADMAP.md Roadmap]
		+	* Our community [https://github.com/wikipathways/wikipathways.org/CODEOFCONDUCT.md Code of Conduct]
		+	* Our organization [https://github.com/wikipathways/wikipathways.org/SOP.md SOP]
		+	* Developer information for the Java-based Pathvisio application: http://developers.pathvisio.org/
	* [https://www.google.com/calendar/ical/e3v5j4msn3f0gurkkfobd3gau0%40group.calendar.google.com/public/basic.ics Meeting schedule (Google Calendar)]		* [https://www.google.com/calendar/ical/e3v5j4msn3f0gurkkfobd3gau0%40group.calendar.google.com/public/basic.ics Meeting schedule (Google Calendar)]

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	== SPARQL queries ==		== SPARQL queries ==
	See the [[:Help:WikiPathways Sparql queries\|WikiPathways SPARQL queries]] for example queries to interact with WikiPathways SPARQL query		See the [[:Help:WikiPathways Sparql queries\|WikiPathways SPARQL queries]] for example queries to interact with WikiPathways SPARQL query
		+
		+	== WikiPathways Team ==
		+	Find information about the organizational structure and the '''[[WikiPathways:Team\|WikiPathways team]]'''.

	== Developer and administrator pages ==		== Developer and administrator pages ==

AlexanderPico: /* Developer and administrator pages */

2017-01-17T19:56:29Z

Developer and administrator pages

←Older revision		Revision as of 19:56, 17 January 2017
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	* [[Special:ListUsers \| User snoop]]		* [[Special:ListUsers \| User snoop]]
	* [[Bots]]		* [[Bots]]
-	* [[News_archive]]
	* [[Special:SpecialCurationTags\|Overview of curation tags]]		* [[Special:SpecialCurationTags\|Overview of curation tags]]

Mkutmon at 23:06, 2 December 2015

2015-12-02T23:06:10Z

←Older revision		Revision as of 23:06, 2 December 2015
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-	== WikiPathways ~~Organization~~ ==	+	== WikiPathways Team ==
-	~~This document defines~~ the ~~scope, roles~~ and ~~processes involved in~~ the ~~WikiPathways project:~~	+	Find information about the organizational structure and the '''[[WikiPathways:Team\|WikiPathways team]]'''.
-	* [[~~media~~:~~WikiPathways_Organization.pdf~~\|~~WikiPathways_Organization.pdf~~]]	+

	== WikiPathways development ==		== WikiPathways development ==
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	== SPARQL queries ==		== SPARQL queries ==
	See the [[:Help:WikiPathways Sparql queries\|WikiPathways SPARQL queries]] for example queries to interact with WikiPathways SPARQL query		See the [[:Help:WikiPathways Sparql queries\|WikiPathways SPARQL queries]] for example queries to interact with WikiPathways SPARQL query
-
-	~~== WikiPathways team ==~~
-	* '''Founders:''' [[#Thomas A.J. Kelder\|Thomas A.J. Kelder]], [[#Alexander R. Pico\|Alexander R. Pico]], [[#Martijn van Iersel\|Martijn van Iersel]], [[#Kristina Hanspers\|Kristina Hanspers]], [[#Bruce R. Conklin\|Bruce R. Conklin]], [[#Chris T. Evelo\|Chris T. Evelo]]
-	* '''Board of Directors:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Chris T. Evelo\|Chris T. Evelo]]
-	* '''Architects:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Martina Kutmon\|Martina Kutmon]]
-	* '''Active Developers:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Kristina Hanspers\|Kristina Hanspers]], [[#Thomas A.J. Kelder\|Thomas A.J. Kelder]], [[#Martina Kutmon\|Martina Kutmon]], [[#Andra Waagmeester\|Andra Waagmeester]], [[#Anwesha Bohler\|Anwesha Bohler]], [[#Anders Riutta\|Anders Riutta]], Nuno Nunes, Mark Hershberger
-	* '''Data Scientist:''' [[#Andra Waagmeester\|Andra Waagmeester]], [[#Anders Riutta\|Anders Riutta]], [[#Egonw\|Egon Willighagen]]
-	* '''Curation Coordinators:''' [[#Kristina Hanspers\|Kristina Hanspers]]
-
-	~~==== Thomas A.J. Kelder ====~~
-	{\|
-	~~\|[[Image:Thomas.jpg\|left\|50px\|caption]]~~
-	\|
-	* Co-founder
-	* Developer
-	* Co-founder and CSO of [http://www.edgeleap.com/ EdgeLeap]
-	\|}
-
-	~~==== Alexander R. Pico ====~~
-	{\|
-	~~\|[[Image:Alex.jpg\|left\|60px\|caption]]~~
-	\|
-	* Co-founder
-	* Developer
-	* Associate Director of Bioinformatics at [http://www.gladstoneinstitutes.org/scientist/pico Gladstone Institutes]
-	\|}
-
-	~~==== Martijn van Iersel ====~~
-	{\|
-	~~\|[[Image:Martijn.jpg\|left\|60px\|caption]]~~
-	\|
-	* Co-founder
-	* Developer
-	* Bioinformatics Consultant at General Bioinformatics [http://www.generalbioinformatics.com/]
-	\|}
-
-	~~==== Kristina Hanspers ====~~
-	{\|
-	~~\|[[Image:Kristina.jpg\|left\|50px\|caption]]~~
-	\|
-	* Co-founder
-	* Developer
-	* Research Associate at the [http://www.gladstone.ucsf.edu Gladstone Institute]
-	\|}
-	~~==== Martina Kutmon ====~~
-	{\|
-	~~\|[[Image:Tina.jpg\|left\|50px\|caption]]~~
-	\|
-	* Developer
-	* Postdoctoral researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
-	\|}
-
-	~~==== Andra Waagmeester ====~~
-	{\|
-	~~\|[[Image:Andra.jpg\|left\|50px\|caption]]~~
-	\|
-	* Developer
-	* PhD researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
-	\|}
-	~~==== Anwesha Bohler ====~~
-	{\|
-	~~\|[[Image:Anwesha.jpg\|left\|50px\|caption]]~~
-	\|
-	* Developer
-	* PhD researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
-	\|}
-	~~==== Anders Riutta ====~~
-	{\|
-	~~\|[[Image:Anders.jpg\|left\|50px\|caption]]~~
-	\|
-	* Developer
-	* Software developer at [http://www.gladstone.ucsf.edu Gladstone Institute]
-	\|}
-
-	~~==== Egon Willighagen ====~~
-	* Developer
-	* Researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
-
-	~~==== Bruce R. Conklin ====~~
-	{\|
-	~~\|[[Image: Bruce.jpg\|left\|50px\|caption]]~~
-	\|
-	* Co-founder
-	* Senior investigator at the [http://www.gladstone.ucsf.edu/gladstone/site/conklin/ Gladstone Institutes]
-	\|}
-
-	~~==== Chris T. Evelo ====~~
-	{\|
-	~~\|[[Image:Chris.jpg\|left\|50px\|caption]]~~
-	\|
-	* Co-founder
-	* Head of the Department of Bioinformatics – BiGCaT at [http://www.bigcat.unimaas.nl/people/index.html Maastricht University]
-	\|}

	== Developer and administrator pages ==		== Developer and administrator pages ==

Anwesha at 20:22, 19 July 2015

2015-07-19T20:22:14Z

←Older revision		Revision as of 20:22, 19 July 2015
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	* '''Board of Directors:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Chris T. Evelo\|Chris T. Evelo]]		* '''Board of Directors:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Chris T. Evelo\|Chris T. Evelo]]
	* '''Architects:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Martina Kutmon\|Martina Kutmon]]		* '''Architects:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Martina Kutmon\|Martina Kutmon]]
-	* '''Active Developers:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Kristina Hanspers\|Kristina Hanspers]], [[#Thomas A.J. Kelder\|Thomas A.J. Kelder]], [[#Martina Kutmon\|Martina Kutmon]], [[#Andra Waagmeester\|Andra Waagmeester]], [[#Anwesha ~~Dutta~~\|Anwesha ~~Dutta~~]], [[#Anders Riutta\|Anders Riutta]], Nuno Nunes, Mark Hershberger	+	* '''Active Developers:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Kristina Hanspers\|Kristina Hanspers]], [[#Thomas A.J. Kelder\|Thomas A.J. Kelder]], [[#Martina Kutmon\|Martina Kutmon]], [[#Andra Waagmeester\|Andra Waagmeester]], [[#Anwesha Bohler\|Anwesha Bohler]], [[#Anders Riutta\|Anders Riutta]], Nuno Nunes, Mark Hershberger
	* '''Data Scientist:''' [[#Andra Waagmeester\|Andra Waagmeester]], [[#Anders Riutta\|Anders Riutta]], [[#Egonw\|Egon Willighagen]]		* '''Data Scientist:''' [[#Andra Waagmeester\|Andra Waagmeester]], [[#Anders Riutta\|Anders Riutta]], [[#Egonw\|Egon Willighagen]]
	* '''Curation Coordinators:''' [[#Kristina Hanspers\|Kristina Hanspers]]		* '''Curation Coordinators:''' [[#Kristina Hanspers\|Kristina Hanspers]]
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	* PhD researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]		* PhD researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
	\|}		\|}
-	==== Anwesha ~~Dutta~~ ====	+	==== Anwesha Bohler ====
	{\|		{\|
	\|[[Image:Anwesha.jpg\|left\|50px\|caption]]		\|[[Image:Anwesha.jpg\|left\|50px\|caption]]

Mkutmon: /* Martina Kutmon */

2015-02-16T15:16:26Z

Martina Kutmon

←Older revision		Revision as of 15:16, 16 February 2015
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	\|		\|
	* Developer		* Developer
-	* ~~PhD~~ researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]	+	* Postdoctoral researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
	\|}		\|}

Thomas at 15:16, 14 February 2015

2015-02-14T15:16:57Z

←Older revision		Revision as of 15:16, 14 February 2015
Line 28:		Line 28:
	* Co-founder		* Co-founder
	* Developer		* Developer
-	* ~~Scientist Bioinformatics,~~ [http://www.~~tno~~.nl/ ~~TNO~~]	+	* Co-founder and CSO of [http://www.edgeleap.com/ EdgeLeap]
	\|}		\|}

Egonw: /* Egon Willighagen */

2013-12-06T11:27:40Z

Egon Willighagen

←Older revision		Revision as of 11:27, 6 December 2013
Line 90:		Line 90:
	* Developer		* Developer
	* Researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]		* Researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
-	\|}

	==== Bruce R. Conklin ====		==== Bruce R. Conklin ====

←Older revision		Revision as of 20:22, 19 July 2015
Line 18:		Line 18:
	* '''Board of Directors:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Chris T. Evelo\|Chris T. Evelo]]		* '''Board of Directors:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Chris T. Evelo\|Chris T. Evelo]]
	* '''Architects:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Martina Kutmon\|Martina Kutmon]]		* '''Architects:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Martina Kutmon\|Martina Kutmon]]
-	* '''Active Developers:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Kristina Hanspers\|Kristina Hanspers]], [[#Thomas A.J. Kelder\|Thomas A.J. Kelder]], [[#Martina Kutmon\|Martina Kutmon]], [[#Andra Waagmeester\|Andra Waagmeester]], [[#Anwesha ~~Dutta~~\|Anwesha ~~Dutta~~]], [[#Anders Riutta\|Anders Riutta]], Nuno Nunes, Mark Hershberger	+	* '''Active Developers:''' [[#Alexander R. Pico\|Alexander R. Pico]], [[#Kristina Hanspers\|Kristina Hanspers]], [[#Thomas A.J. Kelder\|Thomas A.J. Kelder]], [[#Martina Kutmon\|Martina Kutmon]], [[#Andra Waagmeester\|Andra Waagmeester]], [[#Anwesha Bohler\|Anwesha Bohler]], [[#Anders Riutta\|Anders Riutta]], Nuno Nunes, Mark Hershberger
	* '''Data Scientist:''' [[#Andra Waagmeester\|Andra Waagmeester]], [[#Anders Riutta\|Anders Riutta]], [[#Egonw\|Egon Willighagen]]		* '''Data Scientist:''' [[#Andra Waagmeester\|Andra Waagmeester]], [[#Anders Riutta\|Anders Riutta]], [[#Egonw\|Egon Willighagen]]
	* '''Curation Coordinators:''' [[#Kristina Hanspers\|Kristina Hanspers]]		* '''Curation Coordinators:''' [[#Kristina Hanspers\|Kristina Hanspers]]
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	* PhD researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]		* PhD researcher at [http://www.bigcat.unimaas.nl/index.html Maastricht University]
	\|}		\|}
-	==== Anwesha ~~Dutta~~ ====	+	==== Anwesha Bohler ====
	{\|		{\|
	\|[[Image:Anwesha.jpg\|left\|50px\|caption]]		\|[[Image:Anwesha.jpg\|left\|50px\|caption]]