Curation Jamboree 2010 - Revision history

Khanspers: removed IRC link

2016-01-29T22:35:34Z

removed IRC link

←Older revision		Revision as of 22:35, 29 January 2016
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	* When: February 11-12, 2010		* When: February 11-12, 2010
	* Focus: To add descriptions and literature references to pathways		* Focus: To add descriptions and literature references to pathways
-	* Support: WikiPathways admins and curators will be available in an online chat channel during the event to answer all your questions. [[Support_chat_channel\|Click here to go to the chat channel.]].

	== Specific tasks ==		== Specific tasks ==

Khanspers: Added participant list

2014-10-21T21:28:37Z

Added participant list

←Older revision		Revision as of 21:28, 21 October 2014
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	* Analysis Collection: Pathways that don't have major flaws in terms of connected datanodes and interactions, and overall completeness. Descriptions and literature references are not relevant. Pathways that are tagged as Analysis collection may also have the Featured tag. If so, the featured tag should be removed unless the pathway satisfies the below criteria for the Featured tag.		* Analysis Collection: Pathways that don't have major flaws in terms of connected datanodes and interactions, and overall completeness. Descriptions and literature references are not relevant. Pathways that are tagged as Analysis collection may also have the Featured tag. If so, the featured tag should be removed unless the pathway satisfies the below criteria for the Featured tag.
	* Featured: Pathways that are considered the best of WP. These pathways should be fully connected (datanodes and interactions), have a meaningful layout and have a description.		* Featured: Pathways that are considered the best of WP. These pathways should be fully connected (datanodes and interactions), have a meaningful layout and have a description.
		+
		+	== Participants ==
		+	[[User:AlexanderPico\|Alexander Pico]], [[User:Khanspers\|Kristina Hanspers]], [[User:Thomas\|Thomas Kelder]], [[User:MartijnVanIersel\|Martijn van Iersel]], [[User:Mills42\|Caroline Miller]], [[User:Mjh\|Matthew]], [[User:Jilldunham\|Jill Dunham]], [[User:Evelo\|Chris Evelo]], [[User:Michiel\|Michiel Adriaens]], [[User:Andra\|Andra Waagmeester]], [[User:Nsalomonis\|Nathan Salomonis]],

Khanspers at 23:28, 9 February 2010

2010-02-09T23:28:02Z

←Older revision		Revision as of 23:28, 9 February 2010
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	===== Reactome =====		===== Reactome =====
-	* Cite ~~KEGG~~ in the Description section, and include a link to the relevant pathway page at ~~KEGG~~.	+	* Cite Reactome in the Description section, and include a link to the relevant pathway page at Reactome.
	* [[Pathway:WP466\|Reactome example]]		* [[Pathway:WP466\|Reactome example]]

Khanspers at 23:27, 9 February 2010

2010-02-09T23:27:23Z

←Older revision		Revision as of 23:27, 9 February 2010
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	* [http://en.wikipedia.org/wiki/Main_Page Wikipedia]		* [http://en.wikipedia.org/wiki/Main_Page Wikipedia]
	* [http://www.pharmgkb.org/ PharmGKB]		* [http://www.pharmgkb.org/ PharmGKB]
		+	* [http://www.reactome.org/ Reactome]
	* [http://www.genome.jp/kegg/pathway.html KEGG]		* [http://www.genome.jp/kegg/pathway.html KEGG]
	* [http://highwire.stanford.edu/ Scientific literature]		* [http://highwire.stanford.edu/ Scientific literature]
		+
	==== Citing sources ====		==== Citing sources ====
	Citing requirements varies between sources, so it is a good idea to find out the specific requirements for any particular source that you use for descriptions. In general, please cite the source for the description in the actual Descriptions section of the pathway with a direct link to the source (i.e. http://en.wikipedia.org/wiki/TGF_beta_signaling_pathway).		Citing requirements varies between sources, so it is a good idea to find out the specific requirements for any particular source that you use for descriptions. In general, please cite the source for the description in the actual Descriptions section of the pathway with a direct link to the source (i.e. http://en.wikipedia.org/wiki/TGF_beta_signaling_pathway).
	Below are instructions and examples for how to cite specific sources:		Below are instructions and examples for how to cite specific sources:
		+
		+	===== Wikipedia =====
		+	* Cite Wikipedia in the Description section, and include a link to the relevant page at Wikipedia.
		+	* [[Pathway:WP111\|Wikipedia example]]

	===== PharmGKB =====		===== PharmGKB =====
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	* [[Pathway:WP554\|PharmGKB example]]		* [[Pathway:WP554\|PharmGKB example]]

-	===== ~~Wikipedia~~ =====	+	===== Reactome =====
-	* Cite ~~Wikipedia~~ in the Description section, and include a link to the relevant page at ~~Wikipedia~~.	+	* Cite KEGG in the Description section, and include a link to the relevant pathway page at KEGG.
-	* [[Pathway:~~WP111~~\|~~Wikipedia~~ example]]	+	* [[Pathway:WP466\|Reactome example]]

	===== KEGG =====		===== KEGG =====

Thomas: added chat link

2010-02-05T10:58:01Z

added chat link

←Older revision		Revision as of 10:58, 5 February 2010
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	* When: February 11-12, 2010		* When: February 11-12, 2010
	* Focus: To add descriptions and literature references to pathways		* Focus: To add descriptions and literature references to pathways
-	* Support: WikiPathways admins and curators will be available in an online chat channel ~~(details TBD)~~ during the event to answer all your questions.	+	* Support: WikiPathways admins and curators will be available in an online chat channel during the event to answer all your questions. [[Support_chat_channel\|Click here to go to the chat channel.]].

	== Specific tasks ==		== Specific tasks ==

Khanspers at 23:26, 4 February 2010

2010-02-04T23:26:40Z

←Older revision		Revision as of 23:26, 4 February 2010
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	* When: February 11-12, 2010		* When: February 11-12, 2010
	* Focus: To add descriptions and literature references to pathways		* Focus: To add descriptions and literature references to pathways
-	* Support: WikiPathways admins and curators will be available ~~through IRC~~ (details TBD) during the event to answer all your questions.	+	* Support: WikiPathways admins and curators will be available in an online chat channel (details TBD) during the event to answer all your questions.

	== Specific tasks ==		== Specific tasks ==

Khanspers at 19:59, 4 February 2010

2010-02-04T19:59:49Z

←Older revision		Revision as of 19:59, 4 February 2010
Line 3:		Line 3:
	* When: February 11-12, 2010		* When: February 11-12, 2010
	* Focus: To add descriptions and literature references to pathways		* Focus: To add descriptions and literature references to pathways
-	* Support: WikiPathways admins and curators will be available through ~~[http://java.freenode.net//index.php?channel=wikipathways&nick=your_nickname this interactive chat channel]~~ during the event to answer all your questions.	+	* Support: WikiPathways admins and curators will be available through IRC (details TBD) during the event to answer all your questions.

	== Specific tasks ==		== Specific tasks ==

MartijnVanIersel at 11:05, 4 February 2010

2010-02-04T11:05:13Z

←Older revision		Revision as of 11:05, 4 February 2010
Line 3:		Line 3:
	* When: February 11-12, 2010		* When: February 11-12, 2010
	* Focus: To add descriptions and literature references to pathways		* Focus: To add descriptions and literature references to pathways
-	* Support: WikiPathways admins and curators will be available through [http://java.freenode.net//index.php?channel=wikipathways&nick=your_nickname ~~IRC~~] ~~for~~ the ~~majority of the curation~~ event to answer questions.	+	* Support: WikiPathways admins and curators will be available through [http://java.freenode.net//index.php?channel=wikipathways&nick=your_nickname this interactive chat channel] during the event to answer all your questions.

	== Specific tasks ==		== Specific tasks ==

Khanspers at 19:02, 2 February 2010

2010-02-02T19:02:41Z

←Older revision		Revision as of 19:02, 2 February 2010
Line 3:		Line 3:
	* When: February 11-12, 2010		* When: February 11-12, 2010
	* Focus: To add descriptions and literature references to pathways		* Focus: To add descriptions and literature references to pathways
-	* Support: WikiPathways admins and curators will be available through [http://java.freenode.net//index.php?channel=wikipathways&nick=your_nickname IRC ~~chat~~] for the majority of the curation event to answer questions.	+	* Support: WikiPathways admins and curators will be available through [http://java.freenode.net//index.php?channel=wikipathways&nick=your_nickname IRC] for the majority of the curation event to answer questions.

	== Specific tasks ==		== Specific tasks ==

Khanspers at 00:02, 2 February 2010

2010-02-02T00:02:31Z

←Older revision		Revision as of 00:02, 2 February 2010
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	=== Updating tags ===		=== Updating tags ===
	The goal is to tag pathways accurately according to the tag descriptions below:		The goal is to tag pathways accurately according to the tag descriptions below:
-	* Analysis Collection: Pathways that don't have major flaws in terms of connected datanodes and overall completeness. Descriptions and ~~line connections~~ are not relevant. Pathways that are tagged as Analysis collection may also have the Featured tag. If so, the featured tag should be removed unless the pathway satisfies the below criteria for the Featured tag.	+	* Analysis Collection: Pathways that don't have major flaws in terms of connected datanodes and interactions, and overall completeness. Descriptions and literature references are not relevant. Pathways that are tagged as Analysis collection may also have the Featured tag. If so, the featured tag should be removed unless the pathway satisfies the below criteria for the Featured tag.
	* Featured: Pathways that are considered the best of WP. These pathways should be fully connected (datanodes and interactions), have a meaningful layout and have a description.		* Featured: Pathways that are considered the best of WP. These pathways should be fully connected (datanodes and interactions), have a meaningful layout and have a description.